Hvulgare HORVU0Hr1G032280
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G032280 [ HORVU0Hr1G032280] |
chrUn | 192053555 | 192065434 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G032280.1 HORVU0Hr1G032280.1 |
High | No | 936 | OG0035576 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -29.637 AMFE: -0.615 GC content %: 48.184 | |
| Hvulgare_HORVU0Hr1G032280.10 HORVU0Hr1G032280.10 |
High | No | 1263 | OG0035577 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -26.168 AMFE: -0.625 GC content %: 41.884 | |
| Hvulgare_HORVU0Hr1G032280.22 HORVU0Hr1G032280.22 |
High | No | 845 | OG0002100 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -26.923 AMFE: -0.659 GC content %: 40.828 | |
| Hvulgare_HORVU0Hr1G032280.27 HORVU0Hr1G032280.27 |
High | No | 484 | OG0035578 | Get ORF Coding potential... Type: noncoding Potential: -1.427 Folding energies... MFEI: -25.351 AMFE: -0.636 GC content %: 39.876 | |
| Hvulgare_HORVU0Hr1G032280.28 HORVU0Hr1G032280.28 |
High | No | 1729 | OG0002100 | Get ORF Coding potential... Type: noncoding Potential: -1.323 Folding energies... MFEI: -26.339 AMFE: -0.659 GC content %: 39.965 | |
| Hvulgare_HORVU0Hr1G032280.37 HORVU0Hr1G032280.37 |
Low | No | 1300 | OG0035579 | Get ORF Coding potential... Type: noncoding Potential: -0.820 Folding energies... MFEI: -26.169 AMFE: -0.649 GC content %: 40.308 | |
| Hvulgare_HORVU0Hr1G032280.42 HORVU0Hr1G032280.42 |
Low | No | 1293 | OG0012007 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -26.682 AMFE: -0.666 GC content %: 40.062 | |
| Hvulgare_HORVU0Hr1G032280.43 HORVU0Hr1G032280.43 |
High | No | 973 | OG0012007 | Get ORF Coding potential... Type: noncoding Potential: -1.255 Folding energies... MFEI: -24.183 AMFE: -0.627 GC content %: 38.541 | |
| Hvulgare_HORVU0Hr1G032280.44 HORVU0Hr1G032280.44 |
High | No | 314 | OG0035580 | Get ORF Coding potential... Type: noncoding Potential: -0.704 Folding energies... MFEI: -23.631 AMFE: -0.538 GC content %: 43.949 | |
| Hvulgare_HORVU0Hr1G032280.7 HORVU0Hr1G032280.7 |
High | No | 1636 | OG0035581 | Get ORF Coding potential... Type: noncoding Potential: -1.322 Folding energies... MFEI: -24.847 AMFE: -0.638 GC content %: 38.936 | |
| Hvulgare_HORVU0Hr1G032280.8 HORVU0Hr1G032280.8 |
High | No | 827 | OG0035582 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.680 AMFE: -0.590 GC content %: 41.838 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU0Hr1G032280.37 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU0Hr1G032280.42 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
