Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G000990 [ HORVU1Hr1G000990] |
chr1H | 2511292 | 2816446 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G000990.6 HORVU1Hr1G000990.6 |
Low | No | 357 | OG0035690 | Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -22.857 AMFE: -0.504 GC content %: 45.378 | |
Hvulgare_HORVU1Hr1G000990.7 HORVU1Hr1G000990.7 |
Low | No | 473 | OG0012021 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -23.763 AMFE: -0.500 GC content %: 47.569 | |
Hvulgare_HORVU1Hr1G000990.8 HORVU1Hr1G000990.8 |
Low | No | 487 | OG0012021 | Get ORF Coding potential... Type: noncoding Potential: -0.122 Folding energies... MFEI: -24.148 AMFE: -0.505 GC content %: 47.844 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G000990.6 | SwissProt | 2021-04-01 | P06471 | 5.64e-23 |
Hvulgare_HORVU1Hr1G000990.7 | SwissProt | 2021-04-01 | P06471 | 2.56e-19 |
Hvulgare_HORVU1Hr1G000990.8 | SwissProt | 2021-04-01 | P06471 | 2.55e-19 |