GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G003150 [ HORVU1Hr1G003150]	chr1H	6565818	6574363	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G003150.1 HORVU1Hr1G003150.1	High	No	519	OG0035725		Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -29.499 AMFE: -0.567 GC content %: 52.023
Hvulgare_HORVU1Hr1G003150.3 HORVU1Hr1G003150.3	High	No	506	OG0012024		Get ORF Coding potential... Type: noncoding Potential: -0.883 Folding energies... MFEI: -31.225 AMFE: -0.605 GC content %: 51.581
Hvulgare_HORVU1Hr1G003150.4 HORVU1Hr1G003150.4	High	No	417	OG0012024		Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -27.770 AMFE: -0.570 GC content %: 48.681

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).