Hvulgare HORVU1Hr1G022530
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G022530 [ HORVU1Hr1G022530] |
chr1H | 96131514 | 96135442 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G022530.1 HORVU1Hr1G022530.1 |
Low | No | 1923 | OG0005686 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -26.495 AMFE: -0.604 GC content %: 43.838 | |
| Hvulgare_HORVU1Hr1G022530.17 HORVU1Hr1G022530.17 |
Low | No | 1677 | OG0036062 | Get ORF Coding potential... Type: noncoding Potential: -0.455 Folding energies... MFEI: -26.512 AMFE: -0.609 GC content %: 43.530 | |
| Hvulgare_HORVU1Hr1G022530.21 HORVU1Hr1G022530.21 |
High | No | 1074 | OG0036063 | Get ORF Coding potential... Type: noncoding Potential: -1.359 Folding energies... MFEI: -27.067 AMFE: -0.591 GC content %: 45.810 | |
| Hvulgare_HORVU1Hr1G022530.23 HORVU1Hr1G022530.23 |
Low | No | 1170 | OG0005686 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -29.872 AMFE: -0.621 GC content %: 48.120 | |
| Hvulgare_HORVU1Hr1G022530.24 HORVU1Hr1G022530.24 |
Low | No | 1914 | OG0005686 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -26.082 AMFE: -0.613 GC content %: 42.529 | |
| Hvulgare_HORVU1Hr1G022530.28 HORVU1Hr1G022530.28 |
High | No | 1583 | OG0036064 | Get ORF Coding potential... Type: noncoding Potential: -1.280 Folding energies... MFEI: -22.944 AMFE: -0.592 GC content %: 38.787 | |
| Hvulgare_HORVU1Hr1G022530.3 HORVU1Hr1G022530.3 |
Low | No | 2886 | OG0012048 | Get ORF Coding potential... Type: noncoding Potential: -0.129 Folding energies... MFEI: -26.369 AMFE: -0.635 GC content %: 41.545 | |
| Hvulgare_HORVU1Hr1G022530.30 HORVU1Hr1G022530.30 |
Low | No | 1108 | OG0036065 | Get ORF Coding potential... Type: noncoding Potential: -0.271 Folding energies... MFEI: -24.088 AMFE: -0.578 GC content %: 41.697 | |
| Hvulgare_HORVU1Hr1G022530.32 HORVU1Hr1G022530.32 |
Low | No | 1043 | OG0036066 | Get ORF Coding potential... Type: noncoding Potential: -0.382 Folding energies... MFEI: -23.893 AMFE: -0.545 GC content %: 43.816 | |
| Hvulgare_HORVU1Hr1G022530.33 HORVU1Hr1G022530.33 |
Low | No | 780 | OG0036067 | Get ORF Coding potential... Type: noncoding Potential: -0.340 Folding energies... MFEI: -22.282 AMFE: -0.507 GC content %: 43.974 | |
| Hvulgare_HORVU1Hr1G022530.5 HORVU1Hr1G022530.5 |
Low | No | 1518 | OG0036068 | Get ORF Coding potential... Type: noncoding Potential: -0.445 Folding energies... MFEI: -25.863 AMFE: -0.591 GC content %: 43.742 | |
| Hvulgare_HORVU1Hr1G022530.8 HORVU1Hr1G022530.8 |
Low | No | 2023 | OG0012048 | Get ORF Coding potential... Type: noncoding Potential: -0.091 Folding energies... MFEI: -28.660 AMFE: -0.655 GC content %: 43.747 | |
| Hvulgare_HORVU1Hr1G022530.9 HORVU1Hr1G022530.9 |
Low | No | 637 | OG0036069 | Get ORF Coding potential... Type: noncoding Potential: -0.350 Folding energies... MFEI: -32.261 AMFE: -0.630 GC content %: 51.177 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G022530.30 | SwissProt | 2021-04-01 | Q9LPL3 | 6.28e-7 |
| Hvulgare_HORVU1Hr1G022530.1 | SwissProt | 2021-04-01 | Q9LPL3 | 9.24e-14 |
| Hvulgare_HORVU1Hr1G022530.32 | SwissProt | 2021-04-01 | Q9LPL3 | 2.73e-14 |
| Hvulgare_HORVU1Hr1G022530.17 | SwissProt | 2021-04-01 | Q9LPL3 | 7.84e-14 |
| Hvulgare_HORVU1Hr1G022530.33 | SwissProt | 2021-04-01 | Q9LPL3 | 2.02e-15 |
| Hvulgare_HORVU1Hr1G022530.23 | SwissProt | 2021-04-01 | Q9LPL3 | 1.0e-3 |
| Hvulgare_HORVU1Hr1G022530.5 | SwissProt | 2021-04-01 | Q9LPL3 | 1.65e-15 |
| Hvulgare_HORVU1Hr1G022530.24 | SwissProt | 2021-04-01 | Q9LPL3 | 9.16e-14 |
| Hvulgare_HORVU1Hr1G022530.8 | SwissProt | 2021-04-01 | Q9FVQ0 | 2.0e-13 |
| Hvulgare_HORVU1Hr1G022530.3 | SwissProt | 2021-04-01 | Q9FVQ0 | 3.36e-13 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
