GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G025570 [ HORVU1Hr1G025570]	chr1H	124905707	124916152	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G025570.4 HORVU1Hr1G025570.4	High	No	979	OG0036116		Get ORF Coding potential... Type: noncoding Potential: -0.348 Folding energies... MFEI: -40.061 AMFE: -0.683 GC content %: 58.631
Hvulgare_HORVU1Hr1G025570.5 HORVU1Hr1G025570.5	High	No	871	OG0036117		Get ORF Coding potential... Type: noncoding Potential: -0.293 Folding energies... MFEI: -42.158 AMFE: -0.690 GC content %: 61.079
Hvulgare_HORVU1Hr1G025570.7 HORVU1Hr1G025570.7	High	No	558	OG0036118		Get ORF Coding potential... Type: noncoding Potential: -0.915 Folding energies... MFEI: -37.258 AMFE: -0.650 GC content %: 57.348

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).