Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G028030 [ HORVU1Hr1G028030] |
chr1H | 147239826 | 147280641 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G028030.1 HORVU1Hr1G028030.1 |
Low | No | 934 | OG0036147 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -31.938 AMFE: -0.650 GC content %: 49.143 | |
Hvulgare_HORVU1Hr1G028030.10 HORVU1Hr1G028030.10 |
Low | No | 1017 | OG0012061 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -30.973 AMFE: -0.640 GC content %: 48.378 | |
Hvulgare_HORVU1Hr1G028030.11 HORVU1Hr1G028030.11 |
Low | No | 1350 | OG0012061 | Get ORF Coding potential... Type: noncoding Potential: -1.191 Folding energies... MFEI: -38.289 AMFE: -0.688 GC content %: 55.630 | |
Hvulgare_HORVU1Hr1G028030.12 HORVU1Hr1G028030.12 |
Low | No | 584 | OG0036148 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -21.884 AMFE: -0.645 GC content %: 33.904 | |
Hvulgare_HORVU1Hr1G028030.2 HORVU1Hr1G028030.2 |
Low | No | 1986 | OG0036149 | Get ORF Coding potential... Type: noncoding Potential: -0.949 Folding energies... MFEI: -26.128 AMFE: -0.664 GC content %: 39.325 | |
Hvulgare_HORVU1Hr1G028030.9 HORVU1Hr1G028030.9 |
Low | No | 1174 | OG0036150 | Get ORF Coding potential... Type: noncoding Potential: -1.177 Folding energies... MFEI: -38.518 AMFE: -0.665 GC content %: 57.922 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G028030.12 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU1Hr1G028030.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU1Hr1G028030.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 | |
Hvulgare_HORVU1Hr1G028030.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU1Hr1G028030.10 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Hvulgare_HORVU1Hr1G028030.11 | RepBase (RepeatMasker) | 2014-01-31 | LINE/R1 |