Hvulgare HORVU1Hr1G041030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G041030 [ HORVU1Hr1G041030] |
chr1H | 290616560 | 290626282 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G041030.1 HORVU1Hr1G041030.1 |
Low | No | 2368 | OG0036349 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.108 AMFE: -0.693 GC content %: 40.541 | |
| Hvulgare_HORVU1Hr1G041030.10 HORVU1Hr1G041030.10 |
Low | No | 997 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -35.085 AMFE: -0.700 GC content %: 50.150 | |
| Hvulgare_HORVU1Hr1G041030.11 HORVU1Hr1G041030.11 |
Low | No | 2393 | OG0036350 | Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -28.245 AMFE: -0.686 GC content %: 41.162 | |
| Hvulgare_HORVU1Hr1G041030.12 HORVU1Hr1G041030.12 |
Low | No | 1814 | OG0005698 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.230 AMFE: -0.678 GC content %: 41.621 | |
| Hvulgare_HORVU1Hr1G041030.13 HORVU1Hr1G041030.13 |
Low | No | 2809 | OG0036351 | Get ORF Coding potential... Type: noncoding Potential: -1.114 Folding energies... MFEI: -26.867 AMFE: -0.690 GC content %: 38.911 | |
| Hvulgare_HORVU1Hr1G041030.14 HORVU1Hr1G041030.14 |
Low | No | 1411 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.082 Folding energies... MFEI: -31.446 AMFE: -0.671 GC content %: 46.846 | |
| Hvulgare_HORVU1Hr1G041030.15 HORVU1Hr1G041030.15 |
Low | No | 2402 | OG0005699 | Get ORF Coding potential... Type: noncoding Potential: -1.153 Folding energies... MFEI: -28.476 AMFE: -0.685 GC content %: 41.549 | |
| Hvulgare_HORVU1Hr1G041030.16 HORVU1Hr1G041030.16 |
Low | No | 2473 | OG0036352 | Get ORF Coding potential... Type: noncoding Potential: -1.154 Folding energies... MFEI: -28.209 AMFE: -0.683 GC content %: 41.286 | |
| Hvulgare_HORVU1Hr1G041030.17 HORVU1Hr1G041030.17 |
Low | No | 3061 | OG0003228 | Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -26.945 AMFE: -0.688 GC content %: 39.170 | |
| Hvulgare_HORVU1Hr1G041030.18 HORVU1Hr1G041030.18 |
Low | No | 2981 | OG0003228 | Get ORF Coding potential... Type: noncoding Potential: -1.118 Folding energies... MFEI: -26.957 AMFE: -0.686 GC content %: 39.316 | |
| Hvulgare_HORVU1Hr1G041030.19 HORVU1Hr1G041030.19 |
Low | No | 1155 | OG0012084 | Get ORF Coding potential... Type: noncoding Potential: -0.035 Folding energies... MFEI: -32.597 AMFE: -0.682 GC content %: 47.792 | |
| Hvulgare_HORVU1Hr1G041030.2 HORVU1Hr1G041030.2 |
Low | No | 1473 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.091 Folding energies... MFEI: -31.392 AMFE: -0.682 GC content %: 46.029 | |
| Hvulgare_HORVU1Hr1G041030.20 HORVU1Hr1G041030.20 |
Low | No | 1742 | OG0036353 | Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -30.367 AMFE: -0.678 GC content %: 44.776 | |
| Hvulgare_HORVU1Hr1G041030.21 HORVU1Hr1G041030.21 |
Low | No | 1131 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.032 Folding energies... MFEI: -33.572 AMFE: -0.710 GC content %: 47.303 | |
| Hvulgare_HORVU1Hr1G041030.22 HORVU1Hr1G041030.22 |
Low | No | 2211 | OG0003228 | Get ORF Coding potential... Type: noncoding Potential: -0.139 Folding energies... MFEI: -28.150 AMFE: -0.685 GC content %: 41.113 | |
| Hvulgare_HORVU1Hr1G041030.24 HORVU1Hr1G041030.24 |
Low | No | 2094 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.152 Folding energies... MFEI: -28.477 AMFE: -0.693 GC content %: 41.070 | |
| Hvulgare_HORVU1Hr1G041030.25 HORVU1Hr1G041030.25 |
Low | No | 2062 | OG0005698 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -27.789 AMFE: -0.681 GC content %: 40.834 | |
| Hvulgare_HORVU1Hr1G041030.26 HORVU1Hr1G041030.26 |
Low | No | 1650 | OG0036354 | Get ORF Coding potential... Type: noncoding Potential: -1.139 Folding energies... MFEI: -30.091 AMFE: -0.673 GC content %: 44.727 | |
| Hvulgare_HORVU1Hr1G041030.27 HORVU1Hr1G041030.27 |
Low | No | 2574 | OG0012085 | Get ORF Coding potential... Type: noncoding Potential: -1.116 Folding energies... MFEI: -26.581 AMFE: -0.687 GC content %: 38.695 | |
| Hvulgare_HORVU1Hr1G041030.28 HORVU1Hr1G041030.28 |
Low | No | 2619 | OG0036355 | Get ORF Coding potential... Type: noncoding Potential: -0.167 Folding energies... MFEI: -27.178 AMFE: -0.692 GC content %: 39.252 | |
| Hvulgare_HORVU1Hr1G041030.29 HORVU1Hr1G041030.29 |
Low | No | 1134 | OG0001404 | Get ORF Coding potential... Type: noncoding Potential: -0.424 Folding energies... MFEI: -32.487 AMFE: -0.704 GC content %: 46.120 | |
| Hvulgare_HORVU1Hr1G041030.3 HORVU1Hr1G041030.3 |
Low | No | 1197 | OG0005699 | Get ORF Coding potential... Type: noncoding Potential: -0.454 Folding energies... MFEI: -32.097 AMFE: -0.672 GC content %: 47.786 | |
| Hvulgare_HORVU1Hr1G041030.30 HORVU1Hr1G041030.30 |
Low | No | 1455 | OG0012086 | Get ORF Coding potential... Type: noncoding Potential: -1.258 Folding energies... MFEI: -27.746 AMFE: -0.668 GC content %: 41.512 | |
| Hvulgare_HORVU1Hr1G041030.31 HORVU1Hr1G041030.31 |
Low | No | 2093 | OG0036356 | Get ORF Coding potential... Type: noncoding Potential: -1.312 Folding energies... MFEI: -26.011 AMFE: -0.694 GC content %: 37.506 | |
| Hvulgare_HORVU1Hr1G041030.32 HORVU1Hr1G041030.32 |
Low | No | 1417 | OG0003228 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.140 AMFE: -0.686 GC content %: 38.109 | |
| Hvulgare_HORVU1Hr1G041030.4 HORVU1Hr1G041030.4 |
Low | No | 2209 | OG0012084 | Get ORF Coding potential... Type: noncoding Potential: -0.158 Folding energies... MFEI: -28.583 AMFE: -0.692 GC content %: 41.331 | |
| Hvulgare_HORVU1Hr1G041030.5 HORVU1Hr1G041030.5 |
Low | No | 1773 | OG0005698 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -30.051 AMFE: -0.671 GC content %: 44.783 | |
| Hvulgare_HORVU1Hr1G041030.7 HORVU1Hr1G041030.7 |
Low | No | 2799 | OG0012085 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -27.821 AMFE: -0.688 GC content %: 40.443 | |
| Hvulgare_HORVU1Hr1G041030.8 HORVU1Hr1G041030.8 |
Low | No | 1738 | OG0012086 | Get ORF Coding potential... Type: noncoding Potential: -0.123 Folding energies... MFEI: -30.725 AMFE: -0.677 GC content %: 45.397 | |
| Hvulgare_HORVU1Hr1G041030.9 HORVU1Hr1G041030.9 |
Low | No | 1514 | OG0005699 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -31.433 AMFE: -0.678 GC content %: 46.367 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G041030.21 | SwissProt | 2021-04-01 | Q8VC51 | 1.83e-16 |
| Hvulgare_HORVU1Hr1G041030.9 | SwissProt | 2021-04-01 | Q8VC51 | 1.15e-10 |
| Hvulgare_HORVU1Hr1G041030.17 | SwissProt | 2021-04-01 | Q8VC51 | 3.58e-10 |
| Hvulgare_HORVU1Hr1G041030.32 | SwissProt | 2021-04-01 | Q8VC51 | 1.66e-10 |
| Hvulgare_HORVU1Hr1G041030.12 | SwissProt | 2021-04-01 | Q8VC51 | 1.62e-10 |
| Hvulgare_HORVU1Hr1G041030.28 | SwissProt | 2021-04-01 | Q8VC51 | 1.54e-15 |
| Hvulgare_HORVU1Hr1G041030.22 | SwissProt | 2021-04-01 | Q8VC51 | 9.8e-16 |
| Hvulgare_HORVU1Hr1G041030.18 | SwissProt | 2021-04-01 | Q8VC51 | 4.84e-10 |
| Hvulgare_HORVU1Hr1G041030.4 | SwissProt | 2021-04-01 | Q8VC51 | 1.16e-15 |
| Hvulgare_HORVU1Hr1G041030.13 | SwissProt | 2021-04-01 | Q8VC51 | 3.19e-10 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
