GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G041970 [ HORVU1Hr1G041970]	chr1H	303088375	303091124	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G041970.1 HORVU1Hr1G041970.1	High	No	788	OG0002324		Get ORF Coding potential... Type: noncoding Potential: -0.666 Folding energies... MFEI: -30.774 AMFE: -0.602 GC content %: 51.142
Hvulgare_HORVU1Hr1G041970.2 HORVU1Hr1G041970.2	High	No	506	OG0002324		Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -33.775 AMFE: -0.631 GC content %: 53.557
Hvulgare_HORVU1Hr1G041970.3 HORVU1Hr1G041970.3	High	No	402	OG0192325		Get ORF Coding potential... Type: noncoding Potential: -0.699 Folding energies... MFEI: -37.114 AMFE: -0.617 GC content %: 60.199

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).