Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G044380 [ HORVU1Hr1G044380] |
chr1H | 322787504 | 322790215 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G044380.3 HORVU1Hr1G044380.3 |
Low | No | 390 | OG0036425 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -33.872 AMFE: -0.550 GC content %: 61.538 | |
Hvulgare_HORVU1Hr1G044380.4 HORVU1Hr1G044380.4 |
Low | No | 675 | OG0036426 | Get ORF Coding potential... Type: noncoding Potential: -0.692 Folding energies... MFEI: -39.304 AMFE: -0.621 GC content %: 63.259 | |
Hvulgare_HORVU1Hr1G044380.6 HORVU1Hr1G044380.6 |
Low | No | 303 | OG0036427 | Get ORF Coding potential... Type: noncoding Potential: -1.110 Folding energies... MFEI: -37.492 AMFE: -0.604 GC content %: 62.046 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G044380.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Hvulgare_HORVU1Hr1G044380.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
Hvulgare_HORVU1Hr1G044380.3 | SwissProt | 2021-04-01 | P14381 | 3.71e-7 |
Hvulgare_HORVU1Hr1G044380.4 | SwissProt | 2021-04-01 | P0C2F6 | 4.31e-10 |
Hvulgare_HORVU1Hr1G044380.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |