Hvulgare HORVU1Hr1G044530
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G044530 [ HORVU1Hr1G044530] |
chr1H | 323431234 | 323433765 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G044530.1 HORVU1Hr1G044530.1 |
Low | No | 772 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.792 Folding energies... MFEI: -28.510 AMFE: -0.548 GC content %: 52.073 | |
| Hvulgare_HORVU1Hr1G044530.2 HORVU1Hr1G044530.2 |
Low | No | 670 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.415 Folding energies... MFEI: -28.910 AMFE: -0.552 GC content %: 52.388 | |
| Hvulgare_HORVU1Hr1G044530.3 HORVU1Hr1G044530.3 |
Low | No | 533 | OG0019493 | Get ORF Coding potential... Type: noncoding Potential: -0.932 Folding energies... MFEI: -29.268 AMFE: -0.547 GC content %: 53.471 | |
| Hvulgare_HORVU1Hr1G044530.4 HORVU1Hr1G044530.4 |
Low | No | 277 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -31.733 AMFE: -0.505 GC content %: 62.816 | |
| Hvulgare_HORVU1Hr1G044530.5 HORVU1Hr1G044530.5 |
Low | No | 344 | OG0000204 | Get ORF Coding potential... Type: noncoding Potential: -0.325 Folding energies... MFEI: -33.953 AMFE: -0.538 GC content %: 63.081 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G044530.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU1Hr1G044530.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU1Hr1G044530.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU1Hr1G044530.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU1Hr1G044530.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
