GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G050220 [ HORVU1Hr1G050220]	chr1H	372663818	372667268	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G050220.1 HORVU1Hr1G050220.1	High	No	1570	OG0036534		Get ORF Coding potential... Type: noncoding Potential: -0.929 Folding energies... MFEI: -26.522 AMFE: -0.703 GC content %: 37.707
Hvulgare_HORVU1Hr1G050220.2 HORVU1Hr1G050220.2	High	No	622	OG0036535		Get ORF Coding potential... Type: noncoding Potential: -0.433 Folding energies... MFEI: -34.743 AMFE: -0.655 GC content %: 53.055
Hvulgare_HORVU1Hr1G050220.4 HORVU1Hr1G050220.4	High	No	1590	OG0036536		Get ORF Coding potential... Type: noncoding Potential: -0.997 Folding energies... MFEI: -27.918 AMFE: -0.643 GC content %: 43.396

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).