Hvulgare HORVU1Hr1G054080
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G054080 [ HORVU1Hr1G054080] |
chr1H | 399424640 | 399518722 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G054080.1 HORVU1Hr1G054080.1 |
High | No | 382 | OG0036612 | Get ORF Coding potential... Type: noncoding Potential: -1.358 Folding energies... MFEI: -32.565 AMFE: -0.604 GC content %: 53.927 | |
| Hvulgare_HORVU1Hr1G054080.10 HORVU1Hr1G054080.10 |
Low | No | 1517 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -29.216 AMFE: -0.642 GC content %: 45.485 | |
| Hvulgare_HORVU1Hr1G054080.11 HORVU1Hr1G054080.11 |
Low | No | 1795 | OG0002105 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -28.986 AMFE: -0.661 GC content %: 43.844 | |
| Hvulgare_HORVU1Hr1G054080.12 HORVU1Hr1G054080.12 |
Low | No | 1632 | OG0002106 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -28.756 AMFE: -0.644 GC content %: 44.669 | |
| Hvulgare_HORVU1Hr1G054080.13 HORVU1Hr1G054080.13 |
Low | No | 1686 | OG0012109 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -29.181 AMFE: -0.665 GC content %: 43.891 | |
| Hvulgare_HORVU1Hr1G054080.14 HORVU1Hr1G054080.14 |
Low | No | 1885 | OG0005709 | Get ORF Coding potential... Type: noncoding Potential: -0.135 Folding energies... MFEI: -28.218 AMFE: -0.657 GC content %: 42.918 | |
| Hvulgare_HORVU1Hr1G054080.15 HORVU1Hr1G054080.15 |
Low | No | 1789 | OG0002105 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -28.670 AMFE: -0.661 GC content %: 43.376 | |
| Hvulgare_HORVU1Hr1G054080.16 HORVU1Hr1G054080.16 |
Low | No | 1510 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.058 Folding energies... MFEI: -29.126 AMFE: -0.649 GC content %: 44.901 | |
| Hvulgare_HORVU1Hr1G054080.17 HORVU1Hr1G054080.17 |
Low | No | 1694 | OG0002105 | Get ORF Coding potential... Type: noncoding Potential: -0.038 Folding energies... MFEI: -29.569 AMFE: -0.664 GC content %: 44.510 | |
| Hvulgare_HORVU1Hr1G054080.18 HORVU1Hr1G054080.18 |
Low | No | 1620 | OG0002106 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -28.519 AMFE: -0.644 GC content %: 44.259 | |
| Hvulgare_HORVU1Hr1G054080.19 HORVU1Hr1G054080.19 |
Low | No | 1221 | OG0012109 | Get ORF Coding potential... Type: noncoding Potential: -0.067 Folding energies... MFEI: -30.238 AMFE: -0.658 GC content %: 45.946 | |
| Hvulgare_HORVU1Hr1G054080.2 HORVU1Hr1G054080.2 |
Low | No | 1096 | OG0036613 | Get ORF Coding potential... Type: noncoding Potential: -0.053 Folding energies... MFEI: -32.464 AMFE: -0.635 GC content %: 51.095 | |
| Hvulgare_HORVU1Hr1G054080.20 HORVU1Hr1G054080.20 |
Low | No | 1619 | OG0005709 | Get ORF Coding potential... Type: noncoding Potential: -0.112 Folding energies... MFEI: -29.809 AMFE: -0.662 GC content %: 45.028 | |
| Hvulgare_HORVU1Hr1G054080.21 HORVU1Hr1G054080.21 |
Low | No | 1244 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.004 Folding energies... MFEI: -31.206 AMFE: -0.649 GC content %: 48.071 | |
| Hvulgare_HORVU1Hr1G054080.22 HORVU1Hr1G054080.22 |
Low | No | 1465 | OG0036614 | Get ORF Coding potential... Type: noncoding Potential: -0.052 Folding energies... MFEI: -30.573 AMFE: -0.663 GC content %: 46.143 | |
| Hvulgare_HORVU1Hr1G054080.23 HORVU1Hr1G054080.23 |
Low | No | 1264 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.060 Folding energies... MFEI: -31.021 AMFE: -0.648 GC content %: 47.864 | |
| Hvulgare_HORVU1Hr1G054080.24 HORVU1Hr1G054080.24 |
Low | No | 1661 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.106 Folding energies... MFEI: -28.573 AMFE: -0.652 GC content %: 43.829 | |
| Hvulgare_HORVU1Hr1G054080.25 HORVU1Hr1G054080.25 |
Low | No | 1638 | OG0036615 | Get ORF Coding potential... Type: noncoding Potential: -0.113 Folding energies... MFEI: -27.851 AMFE: -0.638 GC content %: 43.651 | |
| Hvulgare_HORVU1Hr1G054080.26 HORVU1Hr1G054080.26 |
Low | No | 1641 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.028 Folding energies... MFEI: -28.684 AMFE: -0.653 GC content %: 43.937 | |
| Hvulgare_HORVU1Hr1G054080.27 HORVU1Hr1G054080.27 |
Low | No | 2016 | OG0005709 | Get ORF Coding potential... Type: noncoding Potential: -0.141 Folding energies... MFEI: -27.808 AMFE: -0.658 GC content %: 42.262 | |
| Hvulgare_HORVU1Hr1G054080.28 HORVU1Hr1G054080.28 |
Low | No | 1572 | OG0002106 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -28.639 AMFE: -0.641 GC content %: 44.656 | |
| Hvulgare_HORVU1Hr1G054080.29 HORVU1Hr1G054080.29 |
Low | No | 1320 | OG0036616 | Get ORF Coding potential... Type: noncoding Potential: -0.019 Folding energies... MFEI: -28.394 AMFE: -0.629 GC content %: 45.152 | |
| Hvulgare_HORVU1Hr1G054080.3 HORVU1Hr1G054080.3 |
Low | No | 1775 | OG0002105 | Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -28.817 AMFE: -0.663 GC content %: 43.493 | |
| Hvulgare_HORVU1Hr1G054080.30 HORVU1Hr1G054080.30 |
Low | No | 1108 | OG0036617 | Get ORF Coding potential... Type: noncoding Potential: -0.253 Folding energies... MFEI: -23.105 AMFE: -0.623 GC content %: 37.094 | |
| Hvulgare_HORVU1Hr1G054080.4 HORVU1Hr1G054080.4 |
Low | No | 1536 | OG0001066 | Get ORF Coding potential... Type: noncoding Potential: -0.096 Folding energies... MFEI: -29.049 AMFE: -0.649 GC content %: 44.792 | |
| Hvulgare_HORVU1Hr1G054080.5 HORVU1Hr1G054080.5 |
High | No | 635 | OG0036618 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -33.339 AMFE: -0.619 GC content %: 53.858 | |
| Hvulgare_HORVU1Hr1G054080.6 HORVU1Hr1G054080.6 |
Low | No | 1375 | OG0002106 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -30.335 AMFE: -0.646 GC content %: 46.982 | |
| Hvulgare_HORVU1Hr1G054080.7 HORVU1Hr1G054080.7 |
Low | No | 1433 | OG0036619 | Get ORF Coding potential... Type: noncoding Potential: -0.071 Folding energies... MFEI: -30.530 AMFE: -0.664 GC content %: 45.987 | |
| Hvulgare_HORVU1Hr1G054080.8 HORVU1Hr1G054080.8 |
Low | No | 1633 | OG0002105 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -29.461 AMFE: -0.656 GC content %: 44.887 | |
| Hvulgare_HORVU1Hr1G054080.9 HORVU1Hr1G054080.9 |
Low | No | 1490 | OG0002106 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -29.295 AMFE: -0.640 GC content %: 45.772 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G054080.20 | SwissProt | 2021-04-01 | Q9LIB2 | 6.83e-19 |
| Hvulgare_HORVU1Hr1G054080.9 | SwissProt | 2021-04-01 | Q9LIB2 | 4.98e-19 |
| Hvulgare_HORVU1Hr1G054080.16 | SwissProt | 2021-04-01 | Q9LIB2 | 2.84e-18 |
| Hvulgare_HORVU1Hr1G054080.30 | SwissProt | 2021-04-01 | Q9LIB2 | 1.15e-19 |
| Hvulgare_HORVU1Hr1G054080.11 | SwissProt | 2021-04-01 | Q9LIB2 | 1.7e-17 |
| Hvulgare_HORVU1Hr1G054080.26 | SwissProt | 2021-04-01 | Q9LIB2 | 3.85e-18 |
| Hvulgare_HORVU1Hr1G054080.21 | SwissProt | 2021-04-01 | Q9LIB2 | 1.22e-18 |
| Hvulgare_HORVU1Hr1G054080.17 | SwissProt | 2021-04-01 | Q9LIB2 | 4.24e-18 |
| Hvulgare_HORVU1Hr1G054080.4 | SwissProt | 2021-04-01 | Q9LIB2 | 1.05e-17 |
| Hvulgare_HORVU1Hr1G054080.12 | SwissProt | 2021-04-01 | Q9LIB2 | 7.01e-19 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
