GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G061200 [ HORVU1Hr1G061200]	chr1H	443916648	443918210	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G061200.1 HORVU1Hr1G061200.1	High	No	1563	OG0036770		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -25.956 AMFE: -0.571 GC content %: 45.425
Hvulgare_HORVU1Hr1G061200.2 HORVU1Hr1G061200.2	High	No	217	OG0001530		Get ORF Coding potential... Type: noncoding Potential: -0.837 Folding energies... MFEI: -34.378 AMFE: -0.514 GC content %: 66.820
Hvulgare_HORVU1Hr1G061200.3 HORVU1Hr1G061200.3	High	No	339	OG0036771		Get ORF Coding potential... Type: noncoding Potential: -0.846 Folding energies... MFEI: -25.339 AMFE: -0.457 GC content %: 55.457

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).