Hvulgare HORVU1Hr1G062570
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G062570 [ HORVU1Hr1G062570] |
chr1H | 450529728 | 450531371 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G062570.1 HORVU1Hr1G062570.1 |
High | No | 493 | OG0012131 | Get ORF Coding potential... Type: noncoding Potential: -0.777 Folding energies... MFEI: -31.657 AMFE: -0.653 GC content %: 48.479 | |
| Hvulgare_HORVU1Hr1G062570.2 HORVU1Hr1G062570.2 |
High | No | 652 | OG0036798 | Get ORF Coding potential... Type: noncoding Potential: -1.333 Folding energies... MFEI: -23.405 AMFE: -0.598 GC content %: 39.110 | |
| Hvulgare_HORVU1Hr1G062570.3 HORVU1Hr1G062570.3 |
High | No | 223 | OG0036799 | Get ORF Coding potential... Type: noncoding Potential: -0.538 Folding energies... MFEI: -25.740 AMFE: -0.522 GC content %: 49.327 | |
| Hvulgare_HORVU1Hr1G062570.5 HORVU1Hr1G062570.5 |
High | No | 279 | OG0036800 | Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -30.430 AMFE: -0.615 GC content %: 49.462 | |
| Hvulgare_HORVU1Hr1G062570.6 HORVU1Hr1G062570.6 |
High | No | 212 | OG0012131 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -31.651 AMFE: -0.564 GC content %: 56.132 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
