GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G068530 [ HORVU1Hr1G068530]	chr1H	481523443	481526444	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G068530.1 HORVU1Hr1G068530.1	High	No	323	OG0036933		Get ORF Coding potential... Type: noncoding Potential: -1.129 Folding energies... MFEI: -36.161 AMFE: -0.508 GC content %: 71.207
Hvulgare_HORVU1Hr1G068530.4 HORVU1Hr1G068530.4	High	No	945	OG0036934		Get ORF Coding potential... Type: noncoding Potential: -0.624 Folding energies... MFEI: -34.656 AMFE: -0.650 GC content %: 53.333
Hvulgare_HORVU1Hr1G068530.7 HORVU1Hr1G068530.7	High	No	671	OG0036935		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -27.377 AMFE: -0.631 GC content %: 43.368

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).