Hvulgare HORVU1Hr1G077890
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G077890 [ HORVU1Hr1G077890] |
chr1H | 518818263 | 518820230 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G077890.1 HORVU1Hr1G077890.1 |
Low | No | 1850 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -29.297 AMFE: -0.612 GC content %: 47.892 | |
| Hvulgare_HORVU1Hr1G077890.10 HORVU1Hr1G077890.10 |
Low | No | 1256 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -33.933 AMFE: -0.638 GC content %: 53.185 | |
| Hvulgare_HORVU1Hr1G077890.11 HORVU1Hr1G077890.11 |
Low | No | 1342 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -33.920 AMFE: -0.642 GC content %: 52.832 | |
| Hvulgare_HORVU1Hr1G077890.12 HORVU1Hr1G077890.12 |
Low | No | 1005 | OG0037119 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -31.015 AMFE: -0.593 GC content %: 52.338 | |
| Hvulgare_HORVU1Hr1G077890.2 HORVU1Hr1G077890.2 |
Low | No | 1512 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.151 Folding energies... MFEI: -31.468 AMFE: -0.632 GC content %: 49.802 | |
| Hvulgare_HORVU1Hr1G077890.3 HORVU1Hr1G077890.3 |
Low | No | 1598 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -30.745 AMFE: -0.621 GC content %: 49.499 | |
| Hvulgare_HORVU1Hr1G077890.4 HORVU1Hr1G077890.4 |
Low | No | 1595 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.157 Folding energies... MFEI: -30.596 AMFE: -0.619 GC content %: 49.467 | |
| Hvulgare_HORVU1Hr1G077890.5 HORVU1Hr1G077890.5 |
Low | No | 1598 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.158 Folding energies... MFEI: -30.651 AMFE: -0.619 GC content %: 49.499 | |
| Hvulgare_HORVU1Hr1G077890.6 HORVU1Hr1G077890.6 |
Low | No | 1445 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -31.820 AMFE: -0.616 GC content %: 51.626 | |
| Hvulgare_HORVU1Hr1G077890.7 HORVU1Hr1G077890.7 |
Low | No | 1410 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -31.787 AMFE: -0.619 GC content %: 51.348 | |
| Hvulgare_HORVU1Hr1G077890.8 HORVU1Hr1G077890.8 |
Low | No | 1348 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.137 Folding energies... MFEI: -31.966 AMFE: -0.616 GC content %: 51.855 | |
| Hvulgare_HORVU1Hr1G077890.9 HORVU1Hr1G077890.9 |
Low | No | 1232 | OG0000421 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -33.214 AMFE: -0.631 GC content %: 52.679 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G077890.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU1Hr1G077890.11 | SwissProt | 2021-04-01 | P0C2F6 | 6.3e-4 |
| Hvulgare_HORVU1Hr1G077890.11 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU1Hr1G077890.7 | SwissProt | 2021-04-01 | P0C2F6 | 5.08e-4 |
| Hvulgare_HORVU1Hr1G077890.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU1Hr1G077890.2 | SwissProt | 2021-04-01 | P0C2F6 | 5.64e-4 |
| Hvulgare_HORVU1Hr1G077890.12 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU1Hr1G077890.8 | SwissProt | 2021-04-01 | P0C2F6 | 4.72e-4 |
| Hvulgare_HORVU1Hr1G077890.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU1Hr1G077890.3 | SwissProt | 2021-04-01 | P0C2F6 | 6.13e-4 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
