Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G078530 [ HORVU1Hr1G078530] |
chr1H | 520639765 | 520648197 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G078530.1 HORVU1Hr1G078530.1 |
Low | No | 806 | OG0037140 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -30.124 AMFE: -0.612 GC content %: 49.256 | |
Hvulgare_HORVU1Hr1G078530.8 HORVU1Hr1G078530.8 |
Low | No | 255 | OG0192372 | Get ORF Coding potential... Type: noncoding Potential: -0.357 Folding energies... MFEI: -38.039 AMFE: -0.574 GC content %: 66.275 | |
Hvulgare_HORVU1Hr1G078530.9 HORVU1Hr1G078530.9 |
Low | No | 256 | OG0192373 | Get ORF Coding potential... Type: noncoding Potential: -0.356 Folding energies... MFEI: -37.891 AMFE: -0.574 GC content %: 66.016 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G078530.1 | SwissProt | 2021-04-01 | Q9SR97 | 2.41e-5 |
Hvulgare_HORVU1Hr1G078530.8 | SwissProt | 2021-04-01 | P05621 | 1.53e-8 |
Hvulgare_HORVU1Hr1G078530.9 | SwissProt | 2021-04-01 | P05621 | 1.42e-8 |