Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G083050 [ HORVU1Hr1G083050] |
chr1H | 531054350 | 531067529 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU1Hr1G083050.4 HORVU1Hr1G083050.4 |
Low | Yes | 2034 | OG0012170 | Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -29.617 AMFE: -0.681 GC content %: 43.461 | |
Hvulgare_HORVU1Hr1G083050.8 HORVU1Hr1G083050.8 |
Low | No | 2321 | OG0012170 | Get ORF Coding potential... Type: noncoding Potential: -0.923 Folding energies... MFEI: -29.487 AMFE: -0.656 GC content %: 44.981 | |
Hvulgare_HORVU1Hr1G083050.9 HORVU1Hr1G083050.9 |
Low | No | 1609 | OG0037240 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -27.328 AMFE: -0.639 GC content %: 42.759 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU1Hr1G083050.8 | SwissProt | 2021-04-01 | Q7XA40 | 9.1e-5 |
Hvulgare_HORVU1Hr1G083050.9 | SwissProt | 2021-04-01 | Q7XA40 | 7.84e-5 |
Hvulgare_HORVU1Hr1G083050.4 | Rfam | 14.6 | MIR1122 | 4.0e-13 |
Hvulgare_HORVU1Hr1G083050.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
Hvulgare_HORVU1Hr1G083050.4 | SwissProt | 2021-04-01 | Q7XA40 | 7.6e-5 |