Hvulgare HORVU1Hr1G084220
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G084220 [ HORVU1Hr1G084220] |
chr1H | 533223403 | 533226070 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G084220.1 HORVU1Hr1G084220.1 |
Low | No | 1223 | OG0037268 | Get ORF Coding potential... Type: noncoding Potential: -0.016 Folding energies... MFEI: -32.510 AMFE: -0.657 GC content %: 49.469 | |
| Hvulgare_HORVU1Hr1G084220.2 HORVU1Hr1G084220.2 |
Low | No | 345 | OG0002634 | Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -32.058 AMFE: -0.647 GC content %: 49.565 | |
| Hvulgare_HORVU1Hr1G084220.3 HORVU1Hr1G084220.3 |
Low | No | 334 | OG0002634 | Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -27.844 AMFE: -0.620 GC content %: 44.910 | |
| Hvulgare_HORVU1Hr1G084220.4 HORVU1Hr1G084220.4 |
Low | No | 432 | OG0002634 | Get ORF Coding potential... Type: noncoding Potential: -0.852 Folding energies... MFEI: -25.532 AMFE: -0.596 GC content %: 42.824 | |
| Hvulgare_HORVU1Hr1G084220.5 HORVU1Hr1G084220.5 |
Low | No | 339 | OG0002634 | Get ORF Coding potential... Type: noncoding Potential: -0.532 Folding energies... MFEI: -32.035 AMFE: -0.624 GC content %: 51.327 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU1Hr1G084220.3 | SwissProt | 2021-04-01 | Q1ZXH4 | 6.5e-6 |
| Hvulgare_HORVU1Hr1G084220.4 | SwissProt | 2021-04-01 | Q1ZXH4 | 1.31e-5 |
| Hvulgare_HORVU1Hr1G084220.5 | SwissProt | 2021-04-01 | Q1ZXH4 | 2.29e-8 |
| Hvulgare_HORVU1Hr1G084220.1 | SwissProt | 2021-04-01 | Q1ZXH4 | 6.46e-15 |
| Hvulgare_HORVU1Hr1G084220.2 | SwissProt | 2021-04-01 | Q1ZXH4 | 6.6e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
