GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G090780 [ HORVU1Hr1G090780]	chr1H	547044966	547052460	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G090780.15 HORVU1Hr1G090780.15	High	No	319	OG0037373		Get ORF Coding potential... Type: noncoding Potential: -0.714 Folding energies... MFEI: -30.345 AMFE: -0.412 GC content %: 73.668
Hvulgare_HORVU1Hr1G090780.4 HORVU1Hr1G090780.4	High	No	908	OG0037374		Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -26.322 AMFE: -0.593 GC content %: 44.383
Hvulgare_HORVU1Hr1G090780.6 HORVU1Hr1G090780.6	High	No	1717	OG0037375		Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -27.676 AMFE: -0.660 GC content %: 41.934

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).