GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU1Hr1G090930 [ HORVU1Hr1G090930]	chr1H	547192815	547193424	r1	Hordeum vulgare (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU1Hr1G090930.1 HORVU1Hr1G090930.1	High	No	291	OG0192387		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -34.296 AMFE: -0.703 GC content %: 48.797
Hvulgare_HORVU1Hr1G090930.2 HORVU1Hr1G090930.2	High	No	310	OG0037380		Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -43.839 AMFE: -0.615 GC content %: 71.290

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).