Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G006770 [ HORVU2Hr1G006770] |
chr2H | 14097355 | 14110488 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G006770.28 HORVU2Hr1G006770.28 |
High | No | 596 | OG0012201 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -25.487 AMFE: -0.649 GC content %: 39.262 | |
Hvulgare_HORVU2Hr1G006770.29 HORVU2Hr1G006770.29 |
High | No | 990 | OG0012201 | Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -27.687 AMFE: -0.653 GC content %: 42.424 | |
Hvulgare_HORVU2Hr1G006770.8 HORVU2Hr1G006770.8 |
Low | Yes | 640 | OG0037585 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -40.062 AMFE: -0.686 GC content %: 58.438 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G006770.8 | Rfam | 14.6 | mir-625 | 2.2e-5 |
Hvulgare_HORVU2Hr1G006770.8 | RepBase (RepeatMasker) | 2014-01-31 | LTR/ERV1 |