Hvulgare HORVU2Hr1G010030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010030 [ HORVU2Hr1G010030] |
chr2H | 18957593 | 18969700 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010030.27 HORVU2Hr1G010030.27 |
Low | No | 3631 | OG0012206 | Get ORF Coding potential... Type: noncoding Potential: -0.101 Folding energies... MFEI: -27.689 AMFE: -0.659 GC content %: 42.027 | |
| Hvulgare_HORVU2Hr1G010030.28 HORVU2Hr1G010030.28 |
Low | No | 4912 | OG0003246 | Get ORF Coding potential... Type: noncoding Potential: -0.125 Folding energies... MFEI: -27.429 AMFE: -0.674 GC content %: 40.676 | |
| Hvulgare_HORVU2Hr1G010030.30 HORVU2Hr1G010030.30 |
Low | No | 4598 | OG0037627 | Get ORF Coding potential... Type: noncoding Potential: -0.202 Folding energies... MFEI: -27.414 AMFE: -0.671 GC content %: 40.844 | |
| Hvulgare_HORVU2Hr1G010030.31 HORVU2Hr1G010030.31 |
Low | No | 3725 | OG0037628 | Get ORF Coding potential... Type: noncoding Potential: -0.174 Folding energies... MFEI: -27.009 AMFE: -0.662 GC content %: 40.779 | |
| Hvulgare_HORVU2Hr1G010030.32 HORVU2Hr1G010030.32 |
Low | No | 3327 | OG0003246 | Get ORF Coding potential... Type: noncoding Potential: -0.387 Folding energies... MFEI: -26.219 AMFE: -0.665 GC content %: 39.435 | |
| Hvulgare_HORVU2Hr1G010030.33 HORVU2Hr1G010030.33 |
Low | No | 3719 | OG0012207 | Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -26.125 AMFE: -0.666 GC content %: 39.231 | |
| Hvulgare_HORVU2Hr1G010030.34 HORVU2Hr1G010030.34 |
Low | No | 3901 | OG0005738 | Get ORF Coding potential... Type: noncoding Potential: -0.465 Folding energies... MFEI: -27.334 AMFE: -0.680 GC content %: 40.220 | |
| Hvulgare_HORVU2Hr1G010030.35 HORVU2Hr1G010030.35 |
Low | No | 3569 | OG0005738 | Get ORF Coding potential... Type: noncoding Potential: -0.448 Folding energies... MFEI: -26.859 AMFE: -0.675 GC content %: 39.787 | |
| Hvulgare_HORVU2Hr1G010030.36 HORVU2Hr1G010030.36 |
Low | No | 3003 | OG0005738 | Get ORF Coding potential... Type: noncoding Potential: -0.425 Folding energies... MFEI: -25.551 AMFE: -0.679 GC content %: 37.629 | |
| Hvulgare_HORVU2Hr1G010030.37 HORVU2Hr1G010030.37 |
Low | No | 3753 | OG0012206 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -25.891 AMFE: -0.667 GC content %: 38.796 | |
| Hvulgare_HORVU2Hr1G010030.38 HORVU2Hr1G010030.38 |
Low | No | 4034 | OG0003246 | Get ORF Coding potential... Type: noncoding Potential: -0.469 Folding energies... MFEI: -26.249 AMFE: -0.675 GC content %: 38.870 | |
| Hvulgare_HORVU2Hr1G010030.39 HORVU2Hr1G010030.39 |
Low | No | 3425 | OG0012207 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -25.439 AMFE: -0.667 GC content %: 38.161 | |
| Hvulgare_HORVU2Hr1G010030.40 HORVU2Hr1G010030.40 |
Low | No | 3501 | OG0003246 | Get ORF Coding potential... Type: noncoding Potential: -0.446 Folding energies... MFEI: -25.313 AMFE: -0.670 GC content %: 37.761 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010030.30 | SwissProt | 2021-04-01 | P22220 | 3.28e-17 |
| Hvulgare_HORVU2Hr1G010030.33 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G010030.27 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G010030.36 | SwissProt | 2021-04-01 | Q7G8Y3 | 5.52e-13 |
| Hvulgare_HORVU2Hr1G010030.39 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G010030.31 | SwissProt | 2021-04-01 | P22220 | 2.47e-17 |
| Hvulgare_HORVU2Hr1G010030.34 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G010030.28 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G010030.37 | SwissProt | 2021-04-01 | Q7G8Y3 | 6.99e-13 |
| Hvulgare_HORVU2Hr1G010030.40 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
