Hvulgare HORVU2Hr1G010660
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010660 [ HORVU2Hr1G010660] |
chr2H | 20492884 | 20496405 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010660.1 HORVU2Hr1G010660.1 |
Low | No | 2729 | OG0005741 | Get ORF Coding potential... Type: noncoding Potential: -1.249 Folding energies... MFEI: -27.274 AMFE: -0.641 GC content %: 42.543 | |
| Hvulgare_HORVU2Hr1G010660.10 HORVU2Hr1G010660.10 |
High | No | 223 | OG0037657 | Get ORF Coding potential... Type: noncoding Potential: -1.204 Folding energies... MFEI: -20.987 AMFE: -0.678 GC content %: 30.942 | |
| Hvulgare_HORVU2Hr1G010660.2 HORVU2Hr1G010660.2 |
Low | No | 3196 | OG0005741 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -26.392 AMFE: -0.633 GC content %: 41.677 | |
| Hvulgare_HORVU2Hr1G010660.3 HORVU2Hr1G010660.3 |
Low | No | 3026 | OG0005742 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.705 AMFE: -0.637 GC content %: 41.937 | |
| Hvulgare_HORVU2Hr1G010660.4 HORVU2Hr1G010660.4 |
Low | No | 2813 | OG0005741 | Get ORF Coding potential... Type: noncoding Potential: -1.251 Folding energies... MFEI: -27.284 AMFE: -0.642 GC content %: 42.481 | |
| Hvulgare_HORVU2Hr1G010660.5 HORVU2Hr1G010660.5 |
Low | No | 2572 | OG0012210 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -27.441 AMFE: -0.633 GC content %: 43.351 | |
| Hvulgare_HORVU2Hr1G010660.6 HORVU2Hr1G010660.6 |
Low | No | 3039 | OG0012210 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.419 AMFE: -0.624 GC content %: 42.317 | |
| Hvulgare_HORVU2Hr1G010660.7 HORVU2Hr1G010660.7 |
Low | No | 2633 | OG0005742 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -27.949 AMFE: -0.663 GC content %: 42.157 | |
| Hvulgare_HORVU2Hr1G010660.8 HORVU2Hr1G010660.8 |
Low | No | 3017 | OG0005742 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -26.868 AMFE: -0.642 GC content %: 41.830 | |
| Hvulgare_HORVU2Hr1G010660.9 HORVU2Hr1G010660.9 |
High | No | 2359 | OG0037658 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -27.707 AMFE: -0.645 GC content %: 42.984 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G010660.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.5 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G010660.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
