Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G012420 [ HORVU2Hr1G012420] |
chr2H | 26120731 | 26125433 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G012420.1 HORVU2Hr1G012420.1 |
High | No | 208 | OG0037688 | Get ORF Coding potential... Type: noncoding Potential: -0.902 Folding energies... MFEI: -36.346 AMFE: -0.586 GC content %: 62.019 | |
Hvulgare_HORVU2Hr1G012420.34 HORVU2Hr1G012420.34 |
Low | No | 1261 | OG0037689 | Get ORF Coding potential... Type: noncoding Potential: -1.098 Folding energies... MFEI: -23.902 AMFE: -0.658 GC content %: 36.320 | |
Hvulgare_HORVU2Hr1G012420.36 HORVU2Hr1G012420.36 |
Low | No | 1293 | OG0012212 | Get ORF Coding potential... Type: noncoding Potential: -0.808 Folding energies... MFEI: -27.858 AMFE: -0.680 GC content %: 40.990 | |
Hvulgare_HORVU2Hr1G012420.39 HORVU2Hr1G012420.39 |
High | No | 1104 | OG0012212 | Get ORF Coding potential... Type: noncoding Potential: -0.787 Folding energies... MFEI: -28.505 AMFE: -0.702 GC content %: 40.580 | |
Hvulgare_HORVU2Hr1G012420.40 HORVU2Hr1G012420.40 |
High | No | 929 | OG0002635 | Get ORF Coding potential... Type: noncoding Potential: -0.940 Folding energies... MFEI: -26.555 AMFE: -0.651 GC content %: 40.797 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G012420.34 | SwissProt | 2021-04-01 | Q8LG98 | 1.17e-6 |
Hvulgare_HORVU2Hr1G012420.36 | SwissProt | 2021-04-01 | Q8LG98 | 5.0e-9 |