Hvulgare HORVU2Hr1G016740
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G016740 [ HORVU2Hr1G016740] |
chr2H | 38598092 | 38603699 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G016740.10 HORVU2Hr1G016740.10 |
Low | No | 1342 | OG0037786 | Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -27.288 AMFE: -0.604 GC content %: 45.156 | |
| Hvulgare_HORVU2Hr1G016740.11 HORVU2Hr1G016740.11 |
Low | No | 1440 | OG0037787 | Get ORF Coding potential... Type: noncoding Potential: -0.916 Folding energies... MFEI: -28.312 AMFE: -0.624 GC content %: 45.347 | |
| Hvulgare_HORVU2Hr1G016740.14 HORVU2Hr1G016740.14 |
Low | No | 1834 | OG0037788 | Get ORF Coding potential... Type: noncoding Potential: -0.407 Folding energies... MFEI: -27.606 AMFE: -0.617 GC content %: 44.711 | |
| Hvulgare_HORVU2Hr1G016740.16 HORVU2Hr1G016740.16 |
Low | No | 1060 | OG0037789 | Get ORF Coding potential... Type: noncoding Potential: -0.334 Folding energies... MFEI: -27.919 AMFE: -0.608 GC content %: 45.943 | |
| Hvulgare_HORVU2Hr1G016740.17 HORVU2Hr1G016740.17 |
Low | No | 1200 | OG0037790 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -29.483 AMFE: -0.635 GC content %: 46.417 | |
| Hvulgare_HORVU2Hr1G016740.18 HORVU2Hr1G016740.18 |
High | No | 1633 | OG0037791 | Get ORF Coding potential... Type: noncoding Potential: -0.862 Folding energies... MFEI: -26.859 AMFE: -0.631 GC content %: 42.560 | |
| Hvulgare_HORVU2Hr1G016740.9 HORVU2Hr1G016740.9 |
Low | No | 1147 | OG0037792 | Get ORF Coding potential... Type: noncoding Potential: -0.884 Folding energies... MFEI: -27.446 AMFE: -0.603 GC content %: 45.510 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G016740.9 | SwissProt | 2021-04-01 | P36591 | 1.45e-8 |
| Hvulgare_HORVU2Hr1G016740.10 | SwissProt | 2021-04-01 | P36591 | 1.48e-5 |
| Hvulgare_HORVU2Hr1G016740.11 | SwissProt | 2021-04-01 | Q18169 | 7.58e-5 |
| Hvulgare_HORVU2Hr1G016740.14 | SwissProt | 2021-04-01 | Q18169 | 1.04e-4 |
| Hvulgare_HORVU2Hr1G016740.16 | SwissProt | 2021-04-01 | P36591 | 2.67e-10 |
| Hvulgare_HORVU2Hr1G016740.17 | SwissProt | 2021-04-01 | Q7QBJ0 | 4.19e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
