GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU2Hr1G020810 [ HORVU2Hr1G020810]	chr2H	58261083	58264274	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU2Hr1G020810.1 HORVU2Hr1G020810.1	High	No	1283	OG0037894		Get ORF Coding potential... Type: noncoding Potential: -0.049 Folding energies... MFEI: -33.414 AMFE: -0.612 GC content %: 54.638
Hvulgare_HORVU2Hr1G020810.2 HORVU2Hr1G020810.2	High	No	270	OG0037895		Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -27.815 AMFE: -0.582 GC content %: 47.778
Hvulgare_HORVU2Hr1G020810.3 HORVU2Hr1G020810.3	Low	No	237	OG0192435		Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -28.861 AMFE: -0.530 GC content %: 54.430

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias	Database	Version	Hit	Evalue
Hvulgare_HORVU2Hr1G020810.3	SwissProt	2021-04-01	F4I114	2.66e-5

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).