Hvulgare HORVU2Hr1G023490
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G023490 [ HORVU2Hr1G023490] |
chr2H | 70369939 | 70374620 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G023490.14 HORVU2Hr1G023490.14 |
Low | No | 2270 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -25.159 AMFE: -0.654 GC content %: 38.458 | |
| Hvulgare_HORVU2Hr1G023490.15 HORVU2Hr1G023490.15 |
Low | No | 2269 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -25.249 AMFE: -0.657 GC content %: 38.431 | |
| Hvulgare_HORVU2Hr1G023490.16 HORVU2Hr1G023490.16 |
Low | No | 1811 | OG0037953 | Get ORF Coding potential... Type: noncoding Potential: -0.765 Folding energies... MFEI: -26.538 AMFE: -0.667 GC content %: 39.812 | |
| Hvulgare_HORVU2Hr1G023490.17 HORVU2Hr1G023490.17 |
Low | No | 2624 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -24.600 AMFE: -0.647 GC content %: 38.034 | |
| Hvulgare_HORVU2Hr1G023490.18 HORVU2Hr1G023490.18 |
Low | No | 1155 | OG0037954 | Get ORF Coding potential... Type: noncoding Potential: -0.574 Folding energies... MFEI: -27.247 AMFE: -0.668 GC content %: 40.779 | |
| Hvulgare_HORVU2Hr1G023490.19 HORVU2Hr1G023490.19 |
High | No | 2553 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.797 Folding energies... MFEI: -24.465 AMFE: -0.645 GC content %: 37.955 | |
| Hvulgare_HORVU2Hr1G023490.20 HORVU2Hr1G023490.20 |
High | No | 2107 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -24.618 AMFE: -0.644 GC content %: 38.253 | |
| Hvulgare_HORVU2Hr1G023490.21 HORVU2Hr1G023490.21 |
Low | No | 2139 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.951 Folding energies... MFEI: -24.998 AMFE: -0.653 GC content %: 38.289 | |
| Hvulgare_HORVU2Hr1G023490.22 HORVU2Hr1G023490.22 |
Low | No | 2140 | OG0001068 | Get ORF Coding potential... Type: noncoding Potential: -0.968 Folding energies... MFEI: -24.977 AMFE: -0.652 GC content %: 38.318 | |
| Hvulgare_HORVU2Hr1G023490.23 HORVU2Hr1G023490.23 |
Low | No | 600 | OG0037955 | Get ORF Coding potential... Type: noncoding Potential: -0.830 Folding energies... MFEI: -29.267 AMFE: -0.711 GC content %: 41.167 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G023490.14 | SwissProt | 2021-04-01 | Q6AUQ7 | 4.77e-8 |
| Hvulgare_HORVU2Hr1G023490.22 | SwissProt | 2021-04-01 | Q6AUQ7 | 8.06e-8 |
| Hvulgare_HORVU2Hr1G023490.15 | SwissProt | 2021-04-01 | Q6AUQ7 | 7.52e-8 |
| Hvulgare_HORVU2Hr1G023490.23 | SwissProt | 2021-04-01 | Q6AUQ7 | 3.71e-9 |
| Hvulgare_HORVU2Hr1G023490.16 | SwissProt | 2021-04-01 | Q6AUQ7 | 6.38e-8 |
| Hvulgare_HORVU2Hr1G023490.17 | SwissProt | 2021-04-01 | Q6AUQ7 | 5.07e-7 |
| Hvulgare_HORVU2Hr1G023490.18 | SwissProt | 2021-04-01 | Q6AUQ7 | 2.55e-8 |
| Hvulgare_HORVU2Hr1G023490.21 | SwissProt | 2021-04-01 | Q6AUQ7 | 8.54e-8 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
