GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Hvulgare_HORVU2Hr1G026610 [ HORVU2Hr1G026610]	chr2H	84826992	84830334	r1	Hordeum vulgare (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Hvulgare_HORVU2Hr1G026610.11 HORVU2Hr1G026610.11	High	No	307	OG0038088		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -26.678 AMFE: -0.471 GC content %: 56.678
Hvulgare_HORVU2Hr1G026610.7 HORVU2Hr1G026610.7	High	No	648	OG0038089		Get ORF Coding potential... Type: noncoding Potential: -0.842 Folding energies... MFEI: -33.117 AMFE: -0.613 GC content %: 54.012
Hvulgare_HORVU2Hr1G026610.9 HORVU2Hr1G026610.9	High	No	371	OG0038090		Get ORF Coding potential... Type: noncoding Potential: -0.843 Folding energies... MFEI: -30.243 AMFE: -0.468 GC content %: 64.690

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).