Hvulgare HORVU2Hr1G030280
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G030280 [ HORVU2Hr1G030280] |
chr2H | 111448455 | 111453734 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G030280.1 HORVU2Hr1G030280.1 |
High | No | 297 | OG0192446 | Get ORF Coding potential... Type: noncoding Potential: -1.213 Folding energies... MFEI: -39.899 AMFE: -0.536 GC content %: 74.411 | |
| Hvulgare_HORVU2Hr1G030280.10 HORVU2Hr1G030280.10 |
High | No | 974 | OG0005760 | Get ORF Coding potential... Type: noncoding Potential: -1.322 Folding energies... MFEI: -28.368 AMFE: -0.607 GC content %: 46.715 | |
| Hvulgare_HORVU2Hr1G030280.11 HORVU2Hr1G030280.11 |
High | No | 1001 | OG0005760 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -27.053 AMFE: -0.598 GC content %: 45.255 | |
| Hvulgare_HORVU2Hr1G030280.12 HORVU2Hr1G030280.12 |
High | No | 1019 | OG0038184 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -26.506 AMFE: -0.590 GC content %: 44.946 | |
| Hvulgare_HORVU2Hr1G030280.13 HORVU2Hr1G030280.13 |
Low | No | 516 | OG0038185 | Get ORF Coding potential... Type: noncoding Potential: -1.347 Folding energies... MFEI: -24.981 AMFE: -0.644 GC content %: 38.760 | |
| Hvulgare_HORVU2Hr1G030280.14 HORVU2Hr1G030280.14 |
Low | No | 739 | OG0038186 | Get ORF Coding potential... Type: noncoding Potential: -1.199 Folding energies... MFEI: -19.350 AMFE: -0.542 GC content %: 35.724 | |
| Hvulgare_HORVU2Hr1G030280.2 HORVU2Hr1G030280.2 |
High | No | 1922 | OG0038187 | Get ORF Coding potential... Type: noncoding Potential: -1.155 Folding energies... MFEI: -27.425 AMFE: -0.622 GC content %: 44.069 | |
| Hvulgare_HORVU2Hr1G030280.3 HORVU2Hr1G030280.3 |
Low | No | 1037 | OG0005760 | Get ORF Coding potential... Type: noncoding Potential: -1.329 Folding energies... MFEI: -31.774 AMFE: -0.639 GC content %: 49.759 | |
| Hvulgare_HORVU2Hr1G030280.4 HORVU2Hr1G030280.4 |
Low | No | 1593 | OG0012283 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -30.031 AMFE: -0.627 GC content %: 47.897 | |
| Hvulgare_HORVU2Hr1G030280.5 HORVU2Hr1G030280.5 |
High | No | 1803 | OG0005761 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -27.360 AMFE: -0.608 GC content %: 45.036 | |
| Hvulgare_HORVU2Hr1G030280.6 HORVU2Hr1G030280.6 |
Low | No | 1792 | OG0012283 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -28.661 AMFE: -0.622 GC content %: 46.094 | |
| Hvulgare_HORVU2Hr1G030280.7 HORVU2Hr1G030280.7 |
Low | No | 1983 | OG0005761 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -27.776 AMFE: -0.623 GC content %: 44.579 | |
| Hvulgare_HORVU2Hr1G030280.8 HORVU2Hr1G030280.8 |
Low | No | 1418 | OG0038188 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -30.056 AMFE: -0.622 GC content %: 48.307 | |
| Hvulgare_HORVU2Hr1G030280.9 HORVU2Hr1G030280.9 |
Low | No | 2268 | OG0005761 | Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -26.918 AMFE: -0.620 GC content %: 43.430 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G030280.8 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.14 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU2Hr1G030280.9 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.7 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 | |
| Hvulgare_HORVU2Hr1G030280.13 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L2 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
