Hvulgare HORVU2Hr1G031910

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Hvulgare_HORVU2Hr1G031910
[ HORVU2Hr1G031910]
chr2H 121700388 121704601 r1 Hordeum vulgare (Phytozome 13)
Coding?
Yes


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Hvulgare_HORVU2Hr1G031910.1
HORVU2Hr1G031910.1
High No 525 OG0038222
Coding potential...
Type: noncoding Potential: -1.049
Folding energies...
MFEI: -28.091 AMFE: -0.435
GC content
%: 64.571
Hvulgare_HORVU2Hr1G031910.4
HORVU2Hr1G031910.4
Low No 636 OG0012287
Coding potential...
Type: noncoding Potential: -0.034
Folding energies...
MFEI: -27.201 AMFE: -0.703
GC content
%: 38.679
Hvulgare_HORVU2Hr1G031910.5
HORVU2Hr1G031910.5
Low No 662 OG0012287
Coding potential...
Type: noncoding Potential: -0.039
Folding energies...
MFEI: -42.296 AMFE: -0.709
GC content
%: 59.668


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Hvulgare_HORVU2Hr1G031910.4  SwissProt 2021-04-01 Q9SIP1 1.34e-6
Hvulgare_HORVU2Hr1G031910.5  SwissProt 2021-04-01 Q9SIP1 1.58e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Hvulgare_HORVU2Hr1G031910.png