Hvulgare HORVU2Hr1G033240
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G033240 [ HORVU2Hr1G033240] |
chr2H | 131820684 | 131826484 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G033240.1 HORVU2Hr1G033240.1 |
Low | Yes | 3325 | OG0003253 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -28.235 AMFE: -0.708 GC content %: 39.880 | |
| Hvulgare_HORVU2Hr1G033240.11 HORVU2Hr1G033240.11 |
Low | Yes | 3822 | OG0003253 | Get ORF Coding potential... Type: noncoding Potential: -0.114 Folding energies... MFEI: -28.898 AMFE: -0.708 GC content %: 40.816 | |
| Hvulgare_HORVU2Hr1G033240.12 HORVU2Hr1G033240.12 |
Low | Yes | 1140 | OG0038262 | Get ORF Coding potential... Type: noncoding Potential: -1.035 Folding energies... MFEI: -30.518 AMFE: -0.763 GC content %: 40.000 | |
| Hvulgare_HORVU2Hr1G033240.13 HORVU2Hr1G033240.13 |
Low | No | 1038 | OG0038263 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -26.985 AMFE: -0.656 GC content %: 41.137 | |
| Hvulgare_HORVU2Hr1G033240.15 HORVU2Hr1G033240.15 |
Low | Yes | 3559 | OG0038264 | Get ORF Coding potential... Type: noncoding Potential: -0.096 Folding energies... MFEI: -28.696 AMFE: -0.712 GC content %: 40.292 | |
| Hvulgare_HORVU2Hr1G033240.16 HORVU2Hr1G033240.16 |
Low | No | 2700 | OG0038265 | Get ORF Coding potential... Type: noncoding Potential: -0.208 Folding energies... MFEI: -27.978 AMFE: -0.685 GC content %: 40.852 | |
| Hvulgare_HORVU2Hr1G033240.17 HORVU2Hr1G033240.17 |
Low | Yes | 4386 | OG0038266 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -28.311 AMFE: -0.713 GC content %: 39.694 | |
| Hvulgare_HORVU2Hr1G033240.18 HORVU2Hr1G033240.18 |
Low | Yes | 2835 | OG0038267 | Get ORF Coding potential... Type: noncoding Potential: -0.020 Folding energies... MFEI: -28.349 AMFE: -0.713 GC content %: 39.788 | |
| Hvulgare_HORVU2Hr1G033240.24 HORVU2Hr1G033240.24 |
Low | Yes | 867 | OG0038268 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -30.923 AMFE: -0.775 GC content %: 39.908 | |
| Hvulgare_HORVU2Hr1G033240.25 HORVU2Hr1G033240.25 |
Low | Yes | 1763 | OG0038269 | Get ORF Coding potential... Type: noncoding Potential: -1.061 Folding energies... MFEI: -28.491 AMFE: -0.734 GC content %: 38.798 | |
| Hvulgare_HORVU2Hr1G033240.26 HORVU2Hr1G033240.26 |
Low | Yes | 1748 | OG0038270 | Get ORF Coding potential... Type: noncoding Potential: -0.046 Folding energies... MFEI: -30.217 AMFE: -0.733 GC content %: 41.247 | |
| Hvulgare_HORVU2Hr1G033240.27 HORVU2Hr1G033240.27 |
Low | No | 1622 | OG0038271 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -27.935 AMFE: -0.664 GC content %: 42.047 | |
| Hvulgare_HORVU2Hr1G033240.28 HORVU2Hr1G033240.28 |
Low | No | 4367 | OG0038272 | Get ORF Coding potential... Type: noncoding Potential: -0.195 Folding energies... MFEI: -27.925 AMFE: -0.689 GC content %: 40.531 | |
| Hvulgare_HORVU2Hr1G033240.31 HORVU2Hr1G033240.31 |
Low | No | 3722 | OG0012293 | Get ORF Coding potential... Type: noncoding Potential: -0.016 Folding energies... MFEI: -28.200 AMFE: -0.683 GC content %: 41.295 | |
| Hvulgare_HORVU2Hr1G033240.33 HORVU2Hr1G033240.33 |
Low | Yes | 3810 | OG0003253 | Get ORF Coding potential... Type: noncoding Potential: -0.114 Folding energies... MFEI: -28.942 AMFE: -0.710 GC content %: 40.787 | |
| Hvulgare_HORVU2Hr1G033240.34 HORVU2Hr1G033240.34 |
Low | Yes | 4727 | OG0005764 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -28.477 AMFE: -0.708 GC content %: 40.216 | |
| Hvulgare_HORVU2Hr1G033240.36 HORVU2Hr1G033240.36 |
Low | Yes | 3900 | OG0005764 | Get ORF Coding potential... Type: noncoding Potential: -0.020 Folding energies... MFEI: -28.900 AMFE: -0.707 GC content %: 40.872 | |
| Hvulgare_HORVU2Hr1G033240.37 HORVU2Hr1G033240.37 |
Low | Yes | 3892 | OG0005764 | Get ORF Coding potential... Type: noncoding Potential: -0.020 Folding energies... MFEI: -28.839 AMFE: -0.705 GC content %: 40.904 | |
| Hvulgare_HORVU2Hr1G033240.4 HORVU2Hr1G033240.4 |
Low | No | 3310 | OG0038273 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -28.139 AMFE: -0.692 GC content %: 40.665 | |
| Hvulgare_HORVU2Hr1G033240.41 HORVU2Hr1G033240.41 |
Low | Yes | 2272 | OG0038274 | Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -30.053 AMFE: -0.711 GC content %: 42.254 | |
| Hvulgare_HORVU2Hr1G033240.42 HORVU2Hr1G033240.42 |
Low | Yes | 1788 | OG0038275 | Get ORF Coding potential... Type: noncoding Potential: -0.790 Folding energies... MFEI: -28.300 AMFE: -0.700 GC content %: 40.436 | |
| Hvulgare_HORVU2Hr1G033240.43 HORVU2Hr1G033240.43 |
Low | Yes | 1804 | OG0038276 | Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -28.442 AMFE: -0.709 GC content %: 40.133 | |
| Hvulgare_HORVU2Hr1G033240.45 HORVU2Hr1G033240.45 |
Low | Yes | 3637 | OG0003253 | Get ORF Coding potential... Type: noncoding Potential: -0.098 Folding energies... MFEI: -28.622 AMFE: -0.705 GC content %: 40.583 | |
| Hvulgare_HORVU2Hr1G033240.48 HORVU2Hr1G033240.48 |
Low | No | 1092 | OG0038277 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -26.804 AMFE: -0.643 GC content %: 41.667 | |
| Hvulgare_HORVU2Hr1G033240.49 HORVU2Hr1G033240.49 |
Low | No | 2862 | OG0012293 | Get ORF Coding potential... Type: noncoding Potential: -0.291 Folding energies... MFEI: -27.701 AMFE: -0.687 GC content %: 40.321 | |
| Hvulgare_HORVU2Hr1G033240.5 HORVU2Hr1G033240.5 |
Low | Yes | 5798 | OG0038278 | Get ORF Coding potential... Type: noncoding Potential: -0.331 Folding energies... MFEI: -27.832 AMFE: -0.709 GC content %: 39.272 | |
| Hvulgare_HORVU2Hr1G033240.6 HORVU2Hr1G033240.6 |
Low | Yes | 2121 | OG0038279 | Get ORF Coding potential... Type: noncoding Potential: -0.051 Folding energies... MFEI: -29.665 AMFE: -0.716 GC content %: 41.443 | |
| Hvulgare_HORVU2Hr1G033240.7 HORVU2Hr1G033240.7 |
Low | Yes | 1059 | OG0038280 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -30.189 AMFE: -0.752 GC content %: 40.132 | |
| Hvulgare_HORVU2Hr1G033240.8 HORVU2Hr1G033240.8 |
Low | No | 1620 | OG0038281 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -26.914 AMFE: -0.680 GC content %: 39.568 | |
| Hvulgare_HORVU2Hr1G033240.9 HORVU2Hr1G033240.9 |
Low | Yes | 1982 | OG0038282 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.436 AMFE: -0.730 GC content %: 38.951 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G033240.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G033240.28 | SwissProt | 2021-04-01 | A5HEI1 | 1.44e-5 |
| Hvulgare_HORVU2Hr1G033240.8 | SwissProt | 2021-04-01 | A5HEI1 | 1.43e-12 |
| Hvulgare_HORVU2Hr1G033240.42 | Rfam | 14.6 | MIR1122 | 3.3e-9 |
| Hvulgare_HORVU2Hr1G033240.26 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G033240.43 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway; LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G033240.17 | SwissProt | 2021-04-01 | A5HEI1 | 1.46e-5 |
| Hvulgare_HORVU2Hr1G033240.48 | SwissProt | 2021-04-01 | A5HEI1 | 2.15e-10 |
| Hvulgare_HORVU2Hr1G033240.33 | Rfam | 14.6 | MIR1122 | 7.0e-9 |
| Hvulgare_HORVU2Hr1G033240.16 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
