Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G040450 [ HORVU2Hr1G040450] |
chr2H | 196310527 | 196311105 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G040450.2 HORVU2Hr1G040450.2 |
Low | No | 360 | OG0005669 | Get ORF Coding potential... Type: noncoding Potential: -0.345 Folding energies... MFEI: -24.306 AMFE: -0.554 GC content %: 43.889 | |
Hvulgare_HORVU2Hr1G040450.4 HORVU2Hr1G040450.4 |
Low | No | 231 | OG0192469 | Get ORF Coding potential... Type: noncoding Potential: -0.579 Folding energies... MFEI: -21.991 AMFE: -0.540 GC content %: 40.693 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G040450.4 | SwissProt | 2021-04-01 | P09617 | 5.58e-13 |
Hvulgare_HORVU2Hr1G040450.2 | SwissProt | 2021-04-01 | P09617 | 8.08e-19 |