Hvulgare HORVU2Hr1G042120
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G042120 [ HORVU2Hr1G042120] |
chr2H | 210129004 | 210133176 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G042120.1 HORVU2Hr1G042120.1 |
High | No | 1694 | OG0002117 | Get ORF Coding potential... Type: noncoding Potential: -0.879 Folding energies... MFEI: -31.641 AMFE: -0.653 GC content %: 48.465 | |
| Hvulgare_HORVU2Hr1G042120.10 HORVU2Hr1G042120.10 |
High | No | 1527 | OG0003254 | Get ORF Coding potential... Type: noncoding Potential: -0.868 Folding energies... MFEI: -31.153 AMFE: -0.674 GC content %: 46.234 | |
| Hvulgare_HORVU2Hr1G042120.12 HORVU2Hr1G042120.12 |
High | No | 2003 | OG0003254 | Get ORF Coding potential... Type: noncoding Potential: -0.894 Folding energies... MFEI: -31.113 AMFE: -0.695 GC content %: 44.783 | |
| Hvulgare_HORVU2Hr1G042120.3 HORVU2Hr1G042120.3 |
High | No | 1704 | OG0002117 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -29.396 AMFE: -0.684 GC content %: 42.958 | |
| Hvulgare_HORVU2Hr1G042120.5 HORVU2Hr1G042120.5 |
High | No | 2852 | OG0002117 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -29.618 AMFE: -0.685 GC content %: 43.233 | |
| Hvulgare_HORVU2Hr1G042120.6 HORVU2Hr1G042120.6 |
High | No | 3134 | OG0002117 | Get ORF Coding potential... Type: noncoding Potential: -0.924 Folding energies... MFEI: -29.266 AMFE: -0.691 GC content %: 42.374 | |
| Hvulgare_HORVU2Hr1G042120.7 HORVU2Hr1G042120.7 |
High | No | 2979 | OG0002117 | Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -29.634 AMFE: -0.692 GC content %: 42.800 | |
| Hvulgare_HORVU2Hr1G042120.9 HORVU2Hr1G042120.9 |
High | No | 1004 | OG0038433 | Get ORF Coding potential... Type: noncoding Potential: -0.815 Folding energies... MFEI: -32.709 AMFE: -0.662 GC content %: 49.402 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
