Hvulgare HORVU2Hr1G045380
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G045380 [ HORVU2Hr1G045380] |
chr2H | 237517184 | 237522272 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G045380.11 HORVU2Hr1G045380.11 |
Low | No | 4439 | OG0005769 | Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -27.069 AMFE: -0.697 GC content %: 38.860 | |
| Hvulgare_HORVU2Hr1G045380.22 HORVU2Hr1G045380.22 |
Low | No | 3134 | OG0038475 | Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -28.398 AMFE: -0.710 GC content %: 40.013 | |
| Hvulgare_HORVU2Hr1G045380.25 HORVU2Hr1G045380.25 |
Low | No | 4484 | OG0038476 | Get ORF Coding potential... Type: noncoding Potential: -0.162 Folding energies... MFEI: -26.947 AMFE: -0.695 GC content %: 38.760 | |
| Hvulgare_HORVU2Hr1G045380.27 HORVU2Hr1G045380.27 |
Low | No | 3816 | OG0038477 | Get ORF Coding potential... Type: noncoding Potential: -1.050 Folding energies... MFEI: -26.654 AMFE: -0.679 GC content %: 39.256 | |
| Hvulgare_HORVU2Hr1G045380.32 HORVU2Hr1G045380.32 |
Low | No | 4752 | OG0005769 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -26.778 AMFE: -0.697 GC content %: 38.426 | |
| Hvulgare_HORVU2Hr1G045380.40 HORVU2Hr1G045380.40 |
Low | No | 2758 | OG0038478 | Get ORF Coding potential... Type: noncoding Potential: -0.098 Folding energies... MFEI: -27.194 AMFE: -0.664 GC content %: 40.935 | |
| Hvulgare_HORVU2Hr1G045380.46 HORVU2Hr1G045380.46 |
Low | No | 3765 | OG0038479 | Get ORF Coding potential... Type: noncoding Potential: -0.216 Folding energies... MFEI: -26.908 AMFE: -0.684 GC content %: 39.336 | |
| Hvulgare_HORVU2Hr1G045380.57 HORVU2Hr1G045380.57 |
Low | No | 3065 | OG0038480 | Get ORF Coding potential... Type: noncoding Potential: -0.110 Folding energies... MFEI: -28.003 AMFE: -0.697 GC content %: 40.163 | |
| Hvulgare_HORVU2Hr1G045380.60 HORVU2Hr1G045380.60 |
Low | No | 4624 | OG0005769 | Get ORF Coding potential... Type: noncoding Potential: -0.003 Folding energies... MFEI: -26.888 AMFE: -0.696 GC content %: 38.646 | |
| Hvulgare_HORVU2Hr1G045380.62 HORVU2Hr1G045380.62 |
Low | No | 4582 | OG0038481 | Get ORF Coding potential... Type: noncoding Potential: -0.009 Folding energies... MFEI: -26.870 AMFE: -0.694 GC content %: 38.739 | |
| Hvulgare_HORVU2Hr1G045380.78 HORVU2Hr1G045380.78 |
Low | No | 3956 | OG0038482 | Get ORF Coding potential... Type: noncoding Potential: -1.052 Folding energies... MFEI: -26.019 AMFE: -0.695 GC content %: 37.462 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G045380.25 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/ERVK | |
| Hvulgare_HORVU2Hr1G045380.60 | SwissProt | 2021-04-01 | F4JTP5 | 7.97e-7 |
| Hvulgare_HORVU2Hr1G045380.27 | SwissProt | 2021-04-01 | Q8RWL6 | 9.45e-6 |
| Hvulgare_HORVU2Hr1G045380.78 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/ERVK | |
| Hvulgare_HORVU2Hr1G045380.32 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/ERVK | |
| Hvulgare_HORVU2Hr1G045380.62 | SwissProt | 2021-04-01 | F4JTP5 | 7.88e-7 |
| Hvulgare_HORVU2Hr1G045380.32 | SwissProt | 2021-04-01 | F4JTP5 | 8.22e-7 |
| Hvulgare_HORVU2Hr1G045380.40 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/ERVK | |
| Hvulgare_HORVU2Hr1G045380.78 | SwissProt | 2021-04-01 | F4JTP5 | 3.75e-10 |
| Hvulgare_HORVU2Hr1G045380.40 | SwissProt | 2021-04-01 | F4JTP5 | 3.83e-13 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
