Hvulgare HORVU2Hr1G047500
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G047500 [ HORVU2Hr1G047500] |
chr2H | 260294591 | 260298645 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G047500.1 HORVU2Hr1G047500.1 |
Low | No | 2781 | OG0038532 | Get ORF Coding potential... Type: noncoding Potential: -1.146 Folding energies... MFEI: -25.868 AMFE: -0.677 GC content %: 38.224 | |
| Hvulgare_HORVU2Hr1G047500.3 HORVU2Hr1G047500.3 |
Low | No | 568 | OG0003251 | Get ORF Coding potential... Type: noncoding Potential: -0.186 Folding energies... MFEI: -30.616 AMFE: -0.669 GC content %: 45.775 | |
| Hvulgare_HORVU2Hr1G047500.4 HORVU2Hr1G047500.4 |
Low | No | 907 | OG0038533 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -22.426 AMFE: -0.630 GC content %: 35.612 | |
| Hvulgare_HORVU2Hr1G047500.7 HORVU2Hr1G047500.7 |
Low | No | 502 | OG0003251 | Get ORF Coding potential... Type: noncoding Potential: -0.124 Folding energies... MFEI: -31.375 AMFE: -0.667 GC content %: 47.012 | |
| Hvulgare_HORVU2Hr1G047500.8 HORVU2Hr1G047500.8 |
Low | No | 427 | OG0003251 | Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -32.857 AMFE: -0.665 GC content %: 49.415 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G047500.7 | SwissProt | 2021-04-01 | Q9ZTX9 | 1.14e-12 |
| Hvulgare_HORVU2Hr1G047500.8 | SwissProt | 2021-04-01 | Q8S985 | 1.81e-12 |
| Hvulgare_HORVU2Hr1G047500.1 | SwissProt | 2021-04-01 | Q8S985 | 9.56e-10 |
| Hvulgare_HORVU2Hr1G047500.3 | SwissProt | 2021-04-01 | Q8S985 | 8.57e-12 |
| Hvulgare_HORVU2Hr1G047500.4 | SwissProt | 2021-04-01 | Q9ZTX9 | 2.42e-9 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
