Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G051510 [ HORVU2Hr1G051510] |
chr2H | 301403728 | 301406858 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Hvulgare_HORVU2Hr1G051510.1 HORVU2Hr1G051510.1 |
High | No | 1754 | OG0038628 | Get ORF Coding potential... Type: noncoding Potential: -1.303 Folding energies... MFEI: -24.185 AMFE: -0.674 GC content %: 35.861 | |
Hvulgare_HORVU2Hr1G051510.2 HORVU2Hr1G051510.2 |
Low | No | 1010 | OG0038629 | Get ORF Coding potential... Type: noncoding Potential: -0.819 Folding energies... MFEI: -24.158 AMFE: -0.527 GC content %: 45.842 | |
Hvulgare_HORVU2Hr1G051510.3 HORVU2Hr1G051510.3 |
High | No | 957 | OG0038630 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -26.301 AMFE: -0.686 GC content %: 38.349 | |
Hvulgare_HORVU2Hr1G051510.6 HORVU2Hr1G051510.6 |
High | No | 699 | OG0038631 | Get ORF Coding potential... Type: noncoding Potential: -0.827 Folding energies... MFEI: -22.818 AMFE: -0.449 GC content %: 50.787 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Hvulgare_HORVU2Hr1G051510.2 | SwissProt | 2021-04-01 | Q7X911 | 2.94e-4 |