Hvulgare HORVU2Hr1G051640
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G051640 [ HORVU2Hr1G051640] |
chr2H | 304071580 | 304082687 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G051640.1 HORVU2Hr1G051640.1 |
Low | No | 771 | OG0038633 | Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -38.080 AMFE: -0.586 GC content %: 64.981 | |
| Hvulgare_HORVU2Hr1G051640.2 HORVU2Hr1G051640.2 |
Low | No | 1798 | OG0038634 | Get ORF Coding potential... Type: noncoding Potential: -1.147 Folding energies... MFEI: -28.610 AMFE: -0.638 GC content %: 44.828 | |
| Hvulgare_HORVU2Hr1G051640.3 HORVU2Hr1G051640.3 |
Low | No | 529 | OG0038635 | Get ORF Coding potential... Type: noncoding Potential: -0.974 Folding energies... MFEI: -30.832 AMFE: -0.595 GC content %: 51.796 | |
| Hvulgare_HORVU2Hr1G051640.4 HORVU2Hr1G051640.4 |
Low | No | 562 | OG0012327 | Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -27.811 AMFE: -0.562 GC content %: 49.466 | |
| Hvulgare_HORVU2Hr1G051640.5 HORVU2Hr1G051640.5 |
Low | No | 576 | OG0038636 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -27.465 AMFE: -0.559 GC content %: 49.132 | |
| Hvulgare_HORVU2Hr1G051640.6 HORVU2Hr1G051640.6 |
Low | No | 565 | OG0012327 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -27.947 AMFE: -0.566 GC content %: 49.381 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G051640.3 | SwissProt | 2021-04-01 | Q9SJH7 | 1.82e-5 |
| Hvulgare_HORVU2Hr1G051640.4 | SwissProt | 2021-04-01 | Q9SJH7 | 1.37e-5 |
| Hvulgare_HORVU2Hr1G051640.5 | SwissProt | 2021-04-01 | Q9SJH7 | 1.6e-5 |
| Hvulgare_HORVU2Hr1G051640.6 | SwissProt | 2021-04-01 | Q9SJH7 | 2.93e-5 |
| Hvulgare_HORVU2Hr1G051640.1 | SwissProt | 2021-04-01 | P49299 | 1.03e-5 |
| Hvulgare_HORVU2Hr1G051640.2 | SwissProt | 2021-04-01 | P49299 | 9.02e-5 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
