Hvulgare HORVU2Hr1G058230
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058230 [ HORVU2Hr1G058230] |
chr2H | 378624578 | 378627849 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058230.10 HORVU2Hr1G058230.10 |
High | No | 2562 | OG0002121 | Get ORF Coding potential... Type: noncoding Potential: -1.384 Folding energies... MFEI: -23.665 AMFE: -0.636 GC content %: 37.198 | |
| Hvulgare_HORVU2Hr1G058230.11 HORVU2Hr1G058230.11 |
High | No | 2279 | OG0038757 | Get ORF Coding potential... Type: noncoding Potential: -1.274 Folding energies... MFEI: -24.076 AMFE: -0.644 GC content %: 37.385 | |
| Hvulgare_HORVU2Hr1G058230.12 HORVU2Hr1G058230.12 |
High | No | 1259 | OG0038758 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -25.520 AMFE: -0.585 GC content %: 43.606 | |
| Hvulgare_HORVU2Hr1G058230.13 HORVU2Hr1G058230.13 |
High | No | 1107 | OG0038759 | Get ORF Coding potential... Type: noncoding Potential: -1.282 Folding energies... MFEI: -24.562 AMFE: -0.587 GC content %: 41.825 | |
| Hvulgare_HORVU2Hr1G058230.14 HORVU2Hr1G058230.14 |
Low | No | 2335 | OG0002121 | Get ORF Coding potential... Type: noncoding Potential: -1.325 Folding energies... MFEI: -23.169 AMFE: -0.651 GC content %: 35.589 | |
| Hvulgare_HORVU2Hr1G058230.6 HORVU2Hr1G058230.6 |
Low | No | 2844 | OG0038760 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -24.459 AMFE: -0.655 GC content %: 37.342 | |
| Hvulgare_HORVU2Hr1G058230.7 HORVU2Hr1G058230.7 |
Low | No | 2774 | OG0002121 | Get ORF Coding potential... Type: noncoding Potential: -1.331 Folding energies... MFEI: -23.908 AMFE: -0.645 GC content %: 37.058 | |
| Hvulgare_HORVU2Hr1G058230.8 HORVU2Hr1G058230.8 |
Low | No | 2540 | OG0002121 | Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -24.327 AMFE: -0.662 GC content %: 36.772 | |
| Hvulgare_HORVU2Hr1G058230.9 HORVU2Hr1G058230.9 |
Low | No | 2879 | OG0002121 | Get ORF Coding potential... Type: noncoding Potential: -1.332 Folding energies... MFEI: -24.057 AMFE: -0.654 GC content %: 36.784 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058230.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058230.8 | SwissProt | 2021-04-01 | Q52T38 | 1.75e-4 |
| Hvulgare_HORVU2Hr1G058230.9 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058230.9 | SwissProt | 2021-04-01 | Q52T38 | 2.0e-4 |
| Hvulgare_HORVU2Hr1G058230.14 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058230.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058230.6 | SwissProt | 2021-04-01 | Q52T38 | 6.35e-6 |
| Hvulgare_HORVU2Hr1G058230.7 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058230.7 | SwissProt | 2021-04-01 | Q52T38 | 7.3e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
