Hvulgare HORVU2Hr1G058930
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058930 [ HORVU2Hr1G058930] |
chr2H | 387396757 | 387402186 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058930.12 HORVU2Hr1G058930.12 |
Low | No | 1456 | OG0002122 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -27.150 AMFE: -0.579 GC content %: 46.909 | |
| Hvulgare_HORVU2Hr1G058930.13 HORVU2Hr1G058930.13 |
Low | No | 851 | OG0038767 | Get ORF Coding potential... Type: noncoding Potential: -0.874 Folding energies... MFEI: -31.751 AMFE: -0.563 GC content %: 56.404 | |
| Hvulgare_HORVU2Hr1G058930.14 HORVU2Hr1G058930.14 |
Low | No | 2192 | OG0002122 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -29.056 AMFE: -0.620 GC content %: 46.898 | |
| Hvulgare_HORVU2Hr1G058930.16 HORVU2Hr1G058930.16 |
Low | No | 1594 | OG0038768 | Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -30.947 AMFE: -0.619 GC content %: 50.000 | |
| Hvulgare_HORVU2Hr1G058930.21 HORVU2Hr1G058930.21 |
Low | No | 1828 | OG0002122 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -27.276 AMFE: -0.583 GC content %: 46.772 | |
| Hvulgare_HORVU2Hr1G058930.23 HORVU2Hr1G058930.23 |
Low | No | 1604 | OG0002122 | Get ORF Coding potential... Type: noncoding Potential: -1.084 Folding energies... MFEI: -27.781 AMFE: -0.573 GC content %: 48.504 | |
| Hvulgare_HORVU2Hr1G058930.25 HORVU2Hr1G058930.25 |
Low | No | 1271 | OG0002122 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -31.322 AMFE: -0.601 GC content %: 52.085 | |
| Hvulgare_HORVU2Hr1G058930.31 HORVU2Hr1G058930.31 |
Low | No | 466 | OG0038769 | Get ORF Coding potential... Type: noncoding Potential: -0.042 Folding energies... MFEI: -28.090 AMFE: -0.536 GC content %: 52.361 | |
| Hvulgare_HORVU2Hr1G058930.4 HORVU2Hr1G058930.4 |
Low | No | 1669 | OG0038770 | Get ORF Coding potential... Type: noncoding Potential: -0.970 Folding energies... MFEI: -29.047 AMFE: -0.583 GC content %: 49.790 | |
| Hvulgare_HORVU2Hr1G058930.7 HORVU2Hr1G058930.7 |
Low | No | 1623 | OG0038771 | Get ORF Coding potential... Type: noncoding Potential: -0.972 Folding energies... MFEI: -26.001 AMFE: -0.575 GC content %: 45.225 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G058930.23 | SwissProt | 2021-04-01 | P15543 | 3.93e-9 |
| Hvulgare_HORVU2Hr1G058930.12 | SwissProt | 2021-04-01 | P15543 | 1.49e-9 |
| Hvulgare_HORVU2Hr1G058930.16 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058930.25 | SwissProt | 2021-04-01 | P15543 | 1.12e-9 |
| Hvulgare_HORVU2Hr1G058930.13 | SwissProt | 2021-04-01 | P15543 | 6.22e-10 |
| Hvulgare_HORVU2Hr1G058930.21 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058930.31 | SwissProt | 2021-04-01 | P15543 | 7.97e-11 |
| Hvulgare_HORVU2Hr1G058930.14 | SwissProt | 2021-04-01 | P15543 | 2.37e-9 |
| Hvulgare_HORVU2Hr1G058930.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
| Hvulgare_HORVU2Hr1G058930.4 | SwissProt | 2021-04-01 | P15543 | 2.91e-9 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
