Hvulgare HORVU2Hr1G064030
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G064030 [ HORVU2Hr1G064030] |
chr2H | 433625999 | 433630102 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G064030.1 HORVU2Hr1G064030.1 |
High | No | 1357 | OG0002123 | Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -24.687 AMFE: -0.630 GC content %: 39.204 | |
| Hvulgare_HORVU2Hr1G064030.2 HORVU2Hr1G064030.2 |
High | No | 1056 | OG0002123 | Get ORF Coding potential... Type: noncoding Potential: -0.508 Folding energies... MFEI: -25.701 AMFE: -0.624 GC content %: 41.193 | |
| Hvulgare_HORVU2Hr1G064030.3 HORVU2Hr1G064030.3 |
High | No | 684 | OG0012346 | Get ORF Coding potential... Type: noncoding Potential: -0.500 Folding energies... MFEI: -26.827 AMFE: -0.620 GC content %: 43.275 | |
| Hvulgare_HORVU2Hr1G064030.4 HORVU2Hr1G064030.4 |
High | No | 1895 | OG0002123 | Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -25.214 AMFE: -0.653 GC content %: 38.628 | |
| Hvulgare_HORVU2Hr1G064030.5 HORVU2Hr1G064030.5 |
High | No | 1553 | OG0002123 | Get ORF Coding potential... Type: noncoding Potential: -0.587 Folding energies... MFEI: -25.853 AMFE: -0.653 GC content %: 39.601 | |
| Hvulgare_HORVU2Hr1G064030.6 HORVU2Hr1G064030.6 |
High | No | 1316 | OG0002123 | Get ORF Coding potential... Type: noncoding Potential: -0.565 Folding energies... MFEI: -25.068 AMFE: -0.655 GC content %: 38.298 | |
| Hvulgare_HORVU2Hr1G064030.7 HORVU2Hr1G064030.7 |
High | No | 880 | OG0012346 | Get ORF Coding potential... Type: noncoding Potential: -0.518 Folding energies... MFEI: -29.125 AMFE: -0.644 GC content %: 45.227 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
