Hvulgare HORVU2Hr1G068200
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G068200 [ HORVU2Hr1G068200] |
chr2H | 479253537 | 479256987 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G068200.1 HORVU2Hr1G068200.1 |
High | No | 2714 | OG0038901 | Get ORF Coding potential... Type: noncoding Potential: -1.283 Folding energies... MFEI: -27.723 AMFE: -0.658 GC content %: 42.115 | |
| Hvulgare_HORVU2Hr1G068200.2 HORVU2Hr1G068200.2 |
High | No | 3185 | OG0012358 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -27.325 AMFE: -0.664 GC content %: 41.162 | |
| Hvulgare_HORVU2Hr1G068200.3 HORVU2Hr1G068200.3 |
High | No | 2004 | OG0038902 | Get ORF Coding potential... Type: noncoding Potential: -1.265 Folding energies... MFEI: -27.720 AMFE: -0.655 GC content %: 42.315 | |
| Hvulgare_HORVU2Hr1G068200.4 HORVU2Hr1G068200.4 |
High | No | 1291 | OG0038903 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -29.334 AMFE: -0.657 GC content %: 44.617 | |
| Hvulgare_HORVU2Hr1G068200.5 HORVU2Hr1G068200.5 |
High | No | 3300 | OG0012358 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -26.824 AMFE: -0.674 GC content %: 39.788 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
