Hvulgare HORVU2Hr1G068530
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G068530 [ HORVU2Hr1G068530] |
chr2H | 482614586 | 482618906 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G068530.1 HORVU2Hr1G068530.1 |
High | No | 312 | OG0192516 | Get ORF Coding potential... Type: noncoding Potential: -1.248 Folding energies... MFEI: -23.205 AMFE: -0.389 GC content %: 59.615 | |
| Hvulgare_HORVU2Hr1G068530.10 HORVU2Hr1G068530.10 |
Low | No | 1265 | OG0038911 | Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -26.474 AMFE: -0.645 GC content %: 41.028 | |
| Hvulgare_HORVU2Hr1G068530.11 HORVU2Hr1G068530.11 |
High | No | 751 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.679 Folding energies... MFEI: -30.173 AMFE: -0.642 GC content %: 47.004 | |
| Hvulgare_HORVU2Hr1G068530.12 HORVU2Hr1G068530.12 |
High | No | 519 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.679 Folding energies... MFEI: -28.536 AMFE: -0.600 GC content %: 47.592 | |
| Hvulgare_HORVU2Hr1G068530.13 HORVU2Hr1G068530.13 |
Low | No | 519 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.531 Folding energies... MFEI: -28.574 AMFE: -0.600 GC content %: 47.592 | |
| Hvulgare_HORVU2Hr1G068530.14 HORVU2Hr1G068530.14 |
High | No | 596 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.722 Folding energies... MFEI: -29.262 AMFE: -0.623 GC content %: 46.980 | |
| Hvulgare_HORVU2Hr1G068530.3 HORVU2Hr1G068530.3 |
Low | No | 871 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.352 Folding energies... MFEI: -29.679 AMFE: -0.634 GC content %: 46.843 | |
| Hvulgare_HORVU2Hr1G068530.4 HORVU2Hr1G068530.4 |
Low | No | 635 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.482 Folding energies... MFEI: -29.543 AMFE: -0.603 GC content %: 48.976 | |
| Hvulgare_HORVU2Hr1G068530.8 HORVU2Hr1G068530.8 |
Low | No | 1702 | OG0000492 | Get ORF Coding potential... Type: noncoding Potential: -0.605 Folding energies... MFEI: -29.595 AMFE: -0.686 GC content %: 43.126 | |
| Hvulgare_HORVU2Hr1G068530.9 HORVU2Hr1G068530.9 |
High | No | 1381 | OG0038912 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -28.979 AMFE: -0.690 GC content %: 41.999 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G068530.10 | SwissProt | 2021-04-01 | Q9Y6Y8 | 5.81e-6 |
| Hvulgare_HORVU2Hr1G068530.13 | SwissProt | 2021-04-01 | Q68DC2 | 2.44e-4 |
| Hvulgare_HORVU2Hr1G068530.3 | SwissProt | 2021-04-01 | Q495M9 | 2.31e-6 |
| Hvulgare_HORVU2Hr1G068530.4 | SwissProt | 2021-04-01 | Q68DC2 | 4.77e-4 |
| Hvulgare_HORVU2Hr1G068530.8 | SwissProt | 2021-04-01 | Q495M9 | 6.56e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
