Hvulgare HORVU2Hr1G069910
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G069910 [ HORVU2Hr1G069910] |
chr2H | 493109140 | 493126136 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G069910.1 HORVU2Hr1G069910.1 |
Low | No | 3590 | OG0005787 | Get ORF Coding potential... Type: noncoding Potential: -0.073 Folding energies... MFEI: -33.579 AMFE: -0.682 GC content %: 49.220 | |
| Hvulgare_HORVU2Hr1G069910.10 HORVU2Hr1G069910.10 |
Low | No | 2461 | OG0038947 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -33.738 AMFE: -0.688 GC content %: 49.045 | |
| Hvulgare_HORVU2Hr1G069910.12 HORVU2Hr1G069910.12 |
Low | No | 1793 | OG0038948 | Get ORF Coding potential... Type: noncoding Potential: -0.224 Folding energies... MFEI: -33.023 AMFE: -0.656 GC content %: 50.363 | |
| Hvulgare_HORVU2Hr1G069910.13 HORVU2Hr1G069910.13 |
Low | No | 1759 | OG0038949 | Get ORF Coding potential... Type: noncoding Potential: -0.079 Folding energies... MFEI: -32.280 AMFE: -0.648 GC content %: 49.801 | |
| Hvulgare_HORVU2Hr1G069910.16 HORVU2Hr1G069910.16 |
Low | No | 4067 | OG0038950 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -30.698 AMFE: -0.644 GC content %: 47.652 | |
| Hvulgare_HORVU2Hr1G069910.17 HORVU2Hr1G069910.17 |
Low | No | 3224 | OG0038951 | Get ORF Coding potential... Type: noncoding Potential: -0.202 Folding energies... MFEI: -32.215 AMFE: -0.641 GC content %: 50.279 | |
| Hvulgare_HORVU2Hr1G069910.18 HORVU2Hr1G069910.18 |
Low | No | 2294 | OG0012364 | Get ORF Coding potential... Type: noncoding Potential: -0.005 Folding energies... MFEI: -31.997 AMFE: -0.644 GC content %: 49.651 | |
| Hvulgare_HORVU2Hr1G069910.2 HORVU2Hr1G069910.2 |
Low | No | 3408 | OG0038952 | Get ORF Coding potential... Type: noncoding Potential: -0.313 Folding energies... MFEI: -33.779 AMFE: -0.679 GC content %: 49.765 | |
| Hvulgare_HORVU2Hr1G069910.20 HORVU2Hr1G069910.20 |
Low | No | 3413 | OG0005787 | Get ORF Coding potential... Type: noncoding Potential: -0.068 Folding energies... MFEI: -31.626 AMFE: -0.646 GC content %: 48.931 | |
| Hvulgare_HORVU2Hr1G069910.21 HORVU2Hr1G069910.21 |
Low | No | 3314 | OG0005787 | Get ORF Coding potential... Type: noncoding Potential: -0.206 Folding energies... MFEI: -31.258 AMFE: -0.645 GC content %: 48.431 | |
| Hvulgare_HORVU2Hr1G069910.22 HORVU2Hr1G069910.22 |
Low | No | 2019 | OG0012364 | Get ORF Coding potential... Type: noncoding Potential: -0.024 Folding energies... MFEI: -30.966 AMFE: -0.651 GC content %: 47.548 | |
| Hvulgare_HORVU2Hr1G069910.23 HORVU2Hr1G069910.23 |
Low | No | 3360 | OG0038953 | Get ORF Coding potential... Type: noncoding Potential: -0.222 Folding energies... MFEI: -30.774 AMFE: -0.646 GC content %: 47.649 | |
| Hvulgare_HORVU2Hr1G069910.24 HORVU2Hr1G069910.24 |
Low | No | 1967 | OG0012365 | Get ORF Coding potential... Type: noncoding Potential: -0.134 Folding energies... MFEI: -31.429 AMFE: -0.654 GC content %: 48.043 | |
| Hvulgare_HORVU2Hr1G069910.27 HORVU2Hr1G069910.27 |
Low | No | 1125 | OG0038954 | Get ORF Coding potential... Type: noncoding Potential: -0.153 Folding energies... MFEI: -30.676 AMFE: -0.637 GC content %: 48.178 | |
| Hvulgare_HORVU2Hr1G069910.28 HORVU2Hr1G069910.28 |
Low | No | 2388 | OG0012366 | Get ORF Coding potential... Type: noncoding Potential: -0.228 Folding energies... MFEI: -30.674 AMFE: -0.639 GC content %: 47.990 | |
| Hvulgare_HORVU2Hr1G069910.29 HORVU2Hr1G069910.29 |
Low | No | 1945 | OG0012365 | Get ORF Coding potential... Type: noncoding Potential: -0.229 Folding energies... MFEI: -31.404 AMFE: -0.651 GC content %: 48.226 | |
| Hvulgare_HORVU2Hr1G069910.30 HORVU2Hr1G069910.30 |
Low | No | 1128 | OG0012367 | Get ORF Coding potential... Type: noncoding Potential: -0.127 Folding energies... MFEI: -31.188 AMFE: -0.643 GC content %: 48.493 | |
| Hvulgare_HORVU2Hr1G069910.34 HORVU2Hr1G069910.34 |
Low | No | 2276 | OG0038955 | Get ORF Coding potential... Type: noncoding Potential: -0.155 Folding energies... MFEI: -30.589 AMFE: -0.638 GC content %: 47.979 | |
| Hvulgare_HORVU2Hr1G069910.36 HORVU2Hr1G069910.36 |
High | No | 858 | OG0038956 | Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -29.068 AMFE: -0.625 GC content %: 46.503 | |
| Hvulgare_HORVU2Hr1G069910.4 HORVU2Hr1G069910.4 |
Low | No | 2400 | OG0038957 | Get ORF Coding potential... Type: noncoding Potential: -0.011 Folding energies... MFEI: -34.438 AMFE: -0.694 GC content %: 49.625 | |
| Hvulgare_HORVU2Hr1G069910.5 HORVU2Hr1G069910.5 |
Low | No | 3563 | OG0038958 | Get ORF Coding potential... Type: noncoding Potential: -0.312 Folding energies... MFEI: -33.315 AMFE: -0.679 GC content %: 49.060 | |
| Hvulgare_HORVU2Hr1G069910.6 HORVU2Hr1G069910.6 |
Low | No | 1532 | OG0012367 | Get ORF Coding potential... Type: noncoding Potential: -0.177 Folding energies... MFEI: -34.654 AMFE: -0.687 GC content %: 50.457 | |
| Hvulgare_HORVU2Hr1G069910.7 HORVU2Hr1G069910.7 |
Low | No | 3460 | OG0038959 | Get ORF Coding potential... Type: noncoding Potential: -0.069 Folding energies... MFEI: -33.850 AMFE: -0.683 GC content %: 49.566 | |
| Hvulgare_HORVU2Hr1G069910.9 HORVU2Hr1G069910.9 |
Low | No | 2713 | OG0012366 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -33.380 AMFE: -0.670 GC content %: 49.834 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G069910.17 | SwissProt | 2021-04-01 | Q84TF0 | 1.94e-12 |
| Hvulgare_HORVU2Hr1G069910.7 | SwissProt | 2021-04-01 | Q84TF0 | 2.16e-12 |
| Hvulgare_HORVU2Hr1G069910.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G069910.1 | SwissProt | 2021-04-01 | Q84TF0 | 2.26e-12 |
| Hvulgare_HORVU2Hr1G069910.30 | SwissProt | 2021-04-01 | Q0PGJ6 | 3.99e-13 |
| Hvulgare_HORVU2Hr1G069910.23 | RepBase (RepeatMasker) | 2014-01-31 | SINE | |
| Hvulgare_HORVU2Hr1G069910.23 | SwissProt | 2021-04-01 | Q0PGJ6 | 5.96e-20 |
| Hvulgare_HORVU2Hr1G069910.17 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy; SINE | |
| Hvulgare_HORVU2Hr1G069910.18 | SwissProt | 2021-04-01 | Q84TF0 | 1.25e-12 |
| Hvulgare_HORVU2Hr1G069910.9 | SwissProt | 2021-04-01 | Q84TF0 | 1.05e-12 |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
