Hvulgare HORVU2Hr1G075220
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G075220 [ HORVU2Hr1G075220] |
chr2H | 542200706 | 542201465 | r1 | Hordeum vulgare (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G075220.1 HORVU2Hr1G075220.1 |
High | No | 666 | OG0005789 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -28.934 AMFE: -0.572 GC content %: 50.601 | |
| Hvulgare_HORVU2Hr1G075220.2 HORVU2Hr1G075220.2 |
High | No | 668 | OG0005789 | Get ORF Coding potential... Type: noncoding Potential: -1.094 Folding energies... MFEI: -28.578 AMFE: -0.566 GC content %: 50.449 | |
| Hvulgare_HORVU2Hr1G075220.3 HORVU2Hr1G075220.3 |
High | No | 638 | OG0009815 | Get ORF Coding potential... Type: noncoding Potential: -1.237 Folding energies... MFEI: -29.091 AMFE: -0.571 GC content %: 50.940 | |
| Hvulgare_HORVU2Hr1G075220.4 HORVU2Hr1G075220.4 |
High | No | 347 | OG0005789 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -33.026 AMFE: -0.551 GC content %: 59.942 | |
| Hvulgare_HORVU2Hr1G075220.5 HORVU2Hr1G075220.5 |
High | No | 711 | OG0039066 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -30.000 AMFE: -0.576 GC content %: 52.039 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
