Hvulgare HORVU2Hr1G077620
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G077620 [ HORVU2Hr1G077620] |
chr2H | 561518096 | 561527997 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G077620.1 HORVU2Hr1G077620.1 |
Low | Yes | 7594 | OG0039105 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -26.643 AMFE: -0.685 GC content %: 38.899 | |
| Hvulgare_HORVU2Hr1G077620.10 HORVU2Hr1G077620.10 |
Low | No | 5725 | OG0039106 | Get ORF Coding potential... Type: noncoding Potential: -0.282 Folding energies... MFEI: -28.810 AMFE: -0.671 GC content %: 42.934 | |
| Hvulgare_HORVU2Hr1G077620.11 HORVU2Hr1G077620.11 |
Low | No | 5536 | OG0039107 | Get ORF Coding potential... Type: noncoding Potential: -0.281 Folding energies... MFEI: -28.553 AMFE: -0.680 GC content %: 42.016 | |
| Hvulgare_HORVU2Hr1G077620.12 HORVU2Hr1G077620.12 |
Low | No | 6243 | OG0012378 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -28.401 AMFE: -0.684 GC content %: 41.502 | |
| Hvulgare_HORVU2Hr1G077620.13 HORVU2Hr1G077620.13 |
Low | No | 5381 | OG0039108 | Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -28.863 AMFE: -0.684 GC content %: 42.204 | |
| Hvulgare_HORVU2Hr1G077620.14 HORVU2Hr1G077620.14 |
Low | No | 6496 | OG0039109 | Get ORF Coding potential... Type: noncoding Potential: -0.286 Folding energies... MFEI: -28.324 AMFE: -0.686 GC content %: 41.272 | |
| Hvulgare_HORVU2Hr1G077620.15 HORVU2Hr1G077620.15 |
Low | No | 5721 | OG0012379 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -26.515 AMFE: -0.690 GC content %: 38.420 | |
| Hvulgare_HORVU2Hr1G077620.16 HORVU2Hr1G077620.16 |
Low | No | 6015 | OG0039110 | Get ORF Coding potential... Type: noncoding Potential: -0.284 Folding energies... MFEI: -28.386 AMFE: -0.684 GC content %: 41.480 | |
| Hvulgare_HORVU2Hr1G077620.17 HORVU2Hr1G077620.17 |
Low | No | 4056 | OG0039111 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -28.393 AMFE: -0.710 GC content %: 39.965 | |
| Hvulgare_HORVU2Hr1G077620.18 HORVU2Hr1G077620.18 |
Low | No | 4875 | OG0039112 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -29.202 AMFE: -0.686 GC content %: 42.544 | |
| Hvulgare_HORVU2Hr1G077620.19 HORVU2Hr1G077620.19 |
Low | No | 4419 | OG0012380 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -27.079 AMFE: -0.692 GC content %: 39.149 | |
| Hvulgare_HORVU2Hr1G077620.2 HORVU2Hr1G077620.2 |
Low | Yes | 6371 | OG0039113 | Get ORF Coding potential... Type: noncoding Potential: -0.321 Folding energies... MFEI: -29.356 AMFE: -0.692 GC content %: 42.411 | |
| Hvulgare_HORVU2Hr1G077620.20 HORVU2Hr1G077620.20 |
Low | No | 4270 | OG0039114 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -30.848 AMFE: -0.702 GC content %: 43.934 | |
| Hvulgare_HORVU2Hr1G077620.21 HORVU2Hr1G077620.21 |
Low | No | 2287 | OG0012381 | Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -28.059 AMFE: -0.716 GC content %: 39.178 | |
| Hvulgare_HORVU2Hr1G077620.22 HORVU2Hr1G077620.22 |
Low | No | 4406 | OG0012380 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -27.138 AMFE: -0.694 GC content %: 39.128 | |
| Hvulgare_HORVU2Hr1G077620.23 HORVU2Hr1G077620.23 |
Low | No | 5144 | OG0012382 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -26.649 AMFE: -0.691 GC content %: 38.589 | |
| Hvulgare_HORVU2Hr1G077620.24 HORVU2Hr1G077620.24 |
Low | No | 4337 | OG0039115 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -27.482 AMFE: -0.697 GC content %: 39.451 | |
| Hvulgare_HORVU2Hr1G077620.25 HORVU2Hr1G077620.25 |
Low | No | 5167 | OG0012382 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -26.752 AMFE: -0.689 GC content %: 38.804 | |
| Hvulgare_HORVU2Hr1G077620.26 HORVU2Hr1G077620.26 |
Low | No | 5352 | OG0005790 | Get ORF Coding potential... Type: noncoding Potential: -1.202 Folding energies... MFEI: -26.646 AMFE: -0.688 GC content %: 38.752 | |
| Hvulgare_HORVU2Hr1G077620.27 HORVU2Hr1G077620.27 |
Low | No | 2212 | OG0012381 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -27.880 AMFE: -0.713 GC content %: 39.105 | |
| Hvulgare_HORVU2Hr1G077620.28 HORVU2Hr1G077620.28 |
Low | No | 4770 | OG0039116 | Get ORF Coding potential... Type: noncoding Potential: -0.943 Folding energies... MFEI: -26.889 AMFE: -0.691 GC content %: 38.910 | |
| Hvulgare_HORVU2Hr1G077620.29 HORVU2Hr1G077620.29 |
Low | No | 5285 | OG0012383 | Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -28.551 AMFE: -0.682 GC content %: 41.835 | |
| Hvulgare_HORVU2Hr1G077620.3 HORVU2Hr1G077620.3 |
Low | Yes | 9846 | OG0039117 | Get ORF Coding potential... Type: noncoding Potential: -1.025 Folding energies... MFEI: -30.210 AMFE: -0.718 GC content %: 42.088 | |
| Hvulgare_HORVU2Hr1G077620.30 HORVU2Hr1G077620.30 |
Low | No | 2854 | OG0039118 | Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -29.404 AMFE: -0.710 GC content %: 41.416 | |
| Hvulgare_HORVU2Hr1G077620.31 HORVU2Hr1G077620.31 |
Low | No | 5429 | OG0012378 | Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -28.641 AMFE: -0.681 GC content %: 42.034 | |
| Hvulgare_HORVU2Hr1G077620.32 HORVU2Hr1G077620.32 |
Low | No | 4123 | OG0039119 | Get ORF Coding potential... Type: noncoding Potential: -0.260 Folding energies... MFEI: -30.977 AMFE: -0.695 GC content %: 44.555 | |
| Hvulgare_HORVU2Hr1G077620.33 HORVU2Hr1G077620.33 |
Low | No | 5157 | OG0039120 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -27.103 AMFE: -0.688 GC content %: 39.403 | |
| Hvulgare_HORVU2Hr1G077620.34 HORVU2Hr1G077620.34 |
Low | No | 5278 | OG0012379 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -26.567 AMFE: -0.686 GC content %: 38.727 | |
| Hvulgare_HORVU2Hr1G077620.35 HORVU2Hr1G077620.35 |
Low | No | 4455 | OG0039121 | Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -29.293 AMFE: -0.682 GC content %: 42.941 | |
| Hvulgare_HORVU2Hr1G077620.36 HORVU2Hr1G077620.36 |
Low | No | 1866 | OG0039122 | Get ORF Coding potential... Type: noncoding Potential: -1.269 Folding energies... MFEI: -29.453 AMFE: -0.674 GC content %: 43.676 | |
| Hvulgare_HORVU2Hr1G077620.37 HORVU2Hr1G077620.37 |
Low | No | 5134 | OG0039123 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -26.817 AMFE: -0.685 GC content %: 39.170 | |
| Hvulgare_HORVU2Hr1G077620.38 HORVU2Hr1G077620.38 |
Low | No | 3063 | OG0039124 | Get ORF Coding potential... Type: noncoding Potential: -0.238 Folding energies... MFEI: -32.860 AMFE: -0.702 GC content %: 46.784 | |
| Hvulgare_HORVU2Hr1G077620.39 HORVU2Hr1G077620.39 |
Low | No | 2103 | OG0039125 | Get ORF Coding potential... Type: noncoding Potential: -1.275 Folding energies... MFEI: -30.528 AMFE: -0.678 GC content %: 45.031 | |
| Hvulgare_HORVU2Hr1G077620.4 HORVU2Hr1G077620.4 |
Low | No | 5050 | OG0039126 | Get ORF Coding potential... Type: noncoding Potential: -1.000 Folding energies... MFEI: -26.796 AMFE: -0.669 GC content %: 40.059 | |
| Hvulgare_HORVU2Hr1G077620.40 HORVU2Hr1G077620.40 |
Low | No | 3077 | OG0039127 | Get ORF Coding potential... Type: noncoding Potential: -1.182 Folding energies... MFEI: -29.649 AMFE: -0.712 GC content %: 41.631 | |
| Hvulgare_HORVU2Hr1G077620.41 HORVU2Hr1G077620.41 |
Low | No | 2958 | OG0039128 | Get ORF Coding potential... Type: noncoding Potential: -0.237 Folding energies... MFEI: -33.005 AMFE: -0.700 GC content %: 47.126 | |
| Hvulgare_HORVU2Hr1G077620.42 HORVU2Hr1G077620.42 |
Low | No | 5565 | OG0039129 | Get ORF Coding potential... Type: noncoding Potential: -0.281 Folding energies... MFEI: -28.794 AMFE: -0.686 GC content %: 41.959 | |
| Hvulgare_HORVU2Hr1G077620.43 HORVU2Hr1G077620.43 |
Low | No | 2486 | OG0039130 | Get ORF Coding potential... Type: noncoding Potential: -0.904 Folding energies... MFEI: -30.660 AMFE: -0.725 GC content %: 42.277 | |
| Hvulgare_HORVU2Hr1G077620.44 HORVU2Hr1G077620.44 |
Low | No | 4120 | OG0039131 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -26.818 AMFE: -0.661 GC content %: 40.583 | |
| Hvulgare_HORVU2Hr1G077620.45 HORVU2Hr1G077620.45 |
Low | No | 3039 | OG0039132 | Get ORF Coding potential... Type: noncoding Potential: -0.232 Folding energies... MFEI: -33.215 AMFE: -0.707 GC content %: 46.956 | |
| Hvulgare_HORVU2Hr1G077620.46 HORVU2Hr1G077620.46 |
Low | No | 3907 | OG0039133 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -31.479 AMFE: -0.703 GC content %: 44.766 | |
| Hvulgare_HORVU2Hr1G077620.47 HORVU2Hr1G077620.47 |
Low | No | 6657 | OG0039134 | Get ORF Coding potential... Type: noncoding Potential: -0.287 Folding energies... MFEI: -29.701 AMFE: -0.695 GC content %: 42.707 | |
| Hvulgare_HORVU2Hr1G077620.48 HORVU2Hr1G077620.48 |
Low | No | 5274 | OG0012383 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -28.878 AMFE: -0.688 GC content %: 41.980 | |
| Hvulgare_HORVU2Hr1G077620.49 HORVU2Hr1G077620.49 |
Low | No | 5268 | OG0005790 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -26.803 AMFE: -0.686 GC content %: 39.047 | |
| Hvulgare_HORVU2Hr1G077620.5 HORVU2Hr1G077620.5 |
Low | No | 5587 | OG0039135 | Get ORF Coding potential... Type: noncoding Potential: -0.313 Folding energies... MFEI: -29.307 AMFE: -0.683 GC content %: 42.921 | |
| Hvulgare_HORVU2Hr1G077620.50 HORVU2Hr1G077620.50 |
Low | No | 5122 | OG0005790 | Get ORF Coding potential... Type: noncoding Potential: -1.200 Folding energies... MFEI: -26.859 AMFE: -0.685 GC content %: 39.184 | |
| Hvulgare_HORVU2Hr1G077620.51 HORVU2Hr1G077620.51 |
Low | No | 3617 | OG0039136 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -28.139 AMFE: -0.706 GC content %: 39.867 | |
| Hvulgare_HORVU2Hr1G077620.52 HORVU2Hr1G077620.52 |
Low | No | 3788 | OG0039137 | Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -27.360 AMFE: -0.690 GC content %: 39.678 | |
| Hvulgare_HORVU2Hr1G077620.53 HORVU2Hr1G077620.53 |
Low | No | 6203 | OG0039138 | Get ORF Coding potential... Type: noncoding Potential: -0.285 Folding energies... MFEI: -29.341 AMFE: -0.686 GC content %: 42.754 | |
| Hvulgare_HORVU2Hr1G077620.54 HORVU2Hr1G077620.54 |
Low | No | 4027 | OG0012384 | Get ORF Coding potential... Type: noncoding Potential: -1.193 Folding energies... MFEI: -26.774 AMFE: -0.671 GC content %: 39.881 | |
| Hvulgare_HORVU2Hr1G077620.55 HORVU2Hr1G077620.55 |
Low | No | 1805 | OG0039139 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -30.886 AMFE: -0.678 GC content %: 45.540 | |
| Hvulgare_HORVU2Hr1G077620.56 HORVU2Hr1G077620.56 |
Low | No | 3660 | OG0012384 | Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -27.183 AMFE: -0.679 GC content %: 40.027 | |
| Hvulgare_HORVU2Hr1G077620.57 HORVU2Hr1G077620.57 |
Low | No | 4263 | OG0039140 | Get ORF Coding potential... Type: noncoding Potential: -0.257 Folding energies... MFEI: -30.258 AMFE: -0.667 GC content %: 45.367 | |
| Hvulgare_HORVU2Hr1G077620.58 HORVU2Hr1G077620.58 |
Low | No | 2479 | OG0039141 | Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -31.053 AMFE: -0.652 GC content %: 47.600 | |
| Hvulgare_HORVU2Hr1G077620.6 HORVU2Hr1G077620.6 |
Low | No | 6962 | OG0039142 | Get ORF Coding potential... Type: noncoding Potential: -0.328 Folding energies... MFEI: -27.768 AMFE: -0.674 GC content %: 41.181 | |
| Hvulgare_HORVU2Hr1G077620.7 HORVU2Hr1G077620.7 |
Low | No | 4873 | OG0039143 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -29.921 AMFE: -0.682 GC content %: 43.874 | |
| Hvulgare_HORVU2Hr1G077620.8 HORVU2Hr1G077620.8 |
Low | No | 6128 | OG0039144 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -29.320 AMFE: -0.708 GC content %: 41.384 | |
| Hvulgare_HORVU2Hr1G077620.9 HORVU2Hr1G077620.9 |
Low | No | 6775 | OG0039145 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -28.109 AMFE: -0.694 GC content %: 40.487 |
Matches to external databases
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G077620.15 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU2Hr1G077620.30 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU2Hr1G077620.11 | SwissProt | 2021-04-01 | F4I3V3 | 7.85e-11 |
| Hvulgare_HORVU2Hr1G077620.49 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU2Hr1G077620.26 | SwissProt | 2021-04-01 | Q84ZN6 | 6.42e-8 |
| Hvulgare_HORVU2Hr1G077620.40 | SwissProt | 2021-04-01 | Q0DV32 | 3.12e-5 |
| Hvulgare_HORVU2Hr1G077620.55 | SwissProt | 2021-04-01 | Q0DV32 | 1.53e-5 |
| Hvulgare_HORVU2Hr1G077620.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway; RC/Helitron | |
| Hvulgare_HORVU2Hr1G077620.25 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron | |
| Hvulgare_HORVU2Hr1G077620.44 | RepBase (RepeatMasker) | 2014-01-31 | RC/Helitron |
... further results
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
