Hvulgare HORVU2Hr1G079020
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G079020 [ HORVU2Hr1G079020] |
chr2H | 572019693 | 572022449 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G079020.11 HORVU2Hr1G079020.11 |
Low | No | 821 | OG0019518 | Get ORF Coding potential... Type: noncoding Potential: -0.849 Folding energies... MFEI: -27.272 AMFE: -0.568 GC content %: 47.990 | |
| Hvulgare_HORVU2Hr1G079020.2 HORVU2Hr1G079020.2 |
Low | Yes | 2070 | OG0039185 | Get ORF Coding potential... Type: noncoding Potential: -1.071 Folding energies... MFEI: -29.242 AMFE: -0.715 GC content %: 40.918 | |
| Hvulgare_HORVU2Hr1G079020.3 HORVU2Hr1G079020.3 |
Low | Yes | 2124 | OG0003696 | Get ORF Coding potential... Type: noncoding Potential: -1.073 Folding energies... MFEI: -27.472 AMFE: -0.667 GC content %: 41.196 | |
| Hvulgare_HORVU2Hr1G079020.4 HORVU2Hr1G079020.4 |
Low | Yes | 1711 | OG0012387 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -28.632 AMFE: -0.684 GC content %: 41.847 | |
| Hvulgare_HORVU2Hr1G079020.5 HORVU2Hr1G079020.5 |
Low | Yes | 1799 | OG0003696 | Get ORF Coding potential... Type: noncoding Potential: -1.063 Folding energies... MFEI: -28.071 AMFE: -0.666 GC content %: 42.135 | |
| Hvulgare_HORVU2Hr1G079020.6 HORVU2Hr1G079020.6 |
Low | Yes | 1906 | OG0012387 | Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -27.760 AMFE: -0.671 GC content %: 41.396 | |
| Hvulgare_HORVU2Hr1G079020.7 HORVU2Hr1G079020.7 |
Low | No | 543 | OG0039186 | Get ORF Coding potential... Type: noncoding Potential: -0.550 Folding energies... MFEI: -27.716 AMFE: -0.590 GC content %: 46.961 | |
| Hvulgare_HORVU2Hr1G079020.8 HORVU2Hr1G079020.8 |
Low | Yes | 1616 | OG0039187 | Get ORF Coding potential... Type: noncoding Potential: -1.057 Folding energies... MFEI: -27.580 AMFE: -0.690 GC content %: 39.975 | |
| Hvulgare_HORVU2Hr1G079020.9 HORVU2Hr1G079020.9 |
Low | No | 936 | OG0003696 | Get ORF Coding potential... Type: noncoding Potential: -1.010 Folding energies... MFEI: -25.769 AMFE: -0.597 GC content %: 43.162 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G079020.6 | Rfam | 14.6 | MIR1122 | 4.0e-11 |
| Hvulgare_HORVU2Hr1G079020.9 | SwissProt | 2021-04-01 | Q7QBJ0 | 2.41e-5 |
| Hvulgare_HORVU2Hr1G079020.3 | SwissProt | 2021-04-01 | Q94AC1 | 1.37e-4 |
| Hvulgare_HORVU2Hr1G079020.6 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G079020.8 | Rfam | 14.6 | MIR1122 | 3.4e-11 |
| Hvulgare_HORVU2Hr1G079020.2 | Rfam | 14.6 | MIR1122 | 4.3e-11 |
| Hvulgare_HORVU2Hr1G079020.4 | SwissProt | 2021-04-01 | P36591 | 7.59e-8 |
| Hvulgare_HORVU2Hr1G079020.8 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G079020.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/TcMar-Stowaway | |
| Hvulgare_HORVU2Hr1G079020.3 | Rfam | 14.6 | MIR1122 | 4.4e-11 |
... further results
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
