Hvulgare HORVU2Hr1G079160
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G079160 [ HORVU2Hr1G079160] |
chr2H | 573154488 | 573157378 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G079160.1 HORVU2Hr1G079160.1 |
High | No | 1339 | OG0039190 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -24.653 AMFE: -0.643 GC content %: 38.312 | |
| Hvulgare_HORVU2Hr1G079160.24 HORVU2Hr1G079160.24 |
High | No | 709 | OG0039191 | Get ORF Coding potential... Type: noncoding Potential: -0.727 Folding energies... MFEI: -22.863 AMFE: -0.577 GC content %: 39.633 | |
| Hvulgare_HORVU2Hr1G079160.26 HORVU2Hr1G079160.26 |
High | No | 1378 | OG0039192 | Get ORF Coding potential... Type: noncoding Potential: -1.054 Folding energies... MFEI: -26.480 AMFE: -0.652 GC content %: 40.639 | |
| Hvulgare_HORVU2Hr1G079160.27 HORVU2Hr1G079160.27 |
High | No | 1172 | OG0039193 | Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -25.580 AMFE: -0.656 GC content %: 38.993 | |
| Hvulgare_HORVU2Hr1G079160.28 HORVU2Hr1G079160.28 |
High | No | 966 | OG0039194 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -24.317 AMFE: -0.628 GC content %: 38.716 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
