Hvulgare HORVU2Hr1G082200
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G082200 [ HORVU2Hr1G082200] |
chr2H | 597036880 | 597042157 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G082200.1 HORVU2Hr1G082200.1 |
High | No | 555 | OG0192536 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -13.532 AMFE: -0.565 GC content %: 23.964 | |
| Hvulgare_HORVU2Hr1G082200.2 HORVU2Hr1G082200.2 |
High | No | 475 | OG0039251 | Get ORF Coding potential... Type: noncoding Potential: -0.981 Folding energies... MFEI: -28.568 AMFE: -0.603 GC content %: 47.368 | |
| Hvulgare_HORVU2Hr1G082200.3 HORVU2Hr1G082200.3 |
High | No | 1615 | OG0039252 | Get ORF Coding potential... Type: noncoding Potential: -0.737 Folding energies... MFEI: -29.721 AMFE: -0.657 GC content %: 45.263 | |
| Hvulgare_HORVU2Hr1G082200.4 HORVU2Hr1G082200.4 |
Low | No | 2479 | OG0012391 | Get ORF Coding potential... Type: noncoding Potential: -0.073 Folding energies... MFEI: -29.548 AMFE: -0.628 GC content %: 47.075 | |
| Hvulgare_HORVU2Hr1G082200.5 HORVU2Hr1G082200.5 |
Low | No | 2678 | OG0012391 | Get ORF Coding potential... Type: noncoding Potential: -0.090 Folding energies... MFEI: -28.525 AMFE: -0.635 GC content %: 44.922 | |
| Hvulgare_HORVU2Hr1G082200.6 HORVU2Hr1G082200.6 |
Low | No | 1123 | OG0039253 | Get ORF Coding potential... Type: noncoding Potential: -0.288 Folding energies... MFEI: -28.308 AMFE: -0.627 GC content %: 45.147 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G082200.4 | SwissProt | 2021-04-01 | Q7FAZ3 | 7.34e-8 |
| Hvulgare_HORVU2Hr1G082200.5 | SwissProt | 2021-04-01 | Q7FAZ3 | 1.64e-7 |
| Hvulgare_HORVU2Hr1G082200.6 | SwissProt | 2021-04-01 | Q7FAZ2 | 9.62e-11 |
| Hvulgare_HORVU2Hr1G082200.4 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU2Hr1G082200.5 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 | |
| Hvulgare_HORVU2Hr1G082200.6 | RepBase (RepeatMasker) | 2014-01-31 | LINE/L1 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
