Hvulgare HORVU2Hr1G091170
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091170 [ HORVU2Hr1G091170] |
chr2H | 647252087 | 647258342 | r1 | Hordeum vulgare (Phytozome 13) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091170.17 HORVU2Hr1G091170.17 |
Low | No | 1197 | OG0003265 | Get ORF Coding potential... Type: noncoding Potential: -0.766 Folding energies... MFEI: -39.958 AMFE: -0.672 GC content %: 59.482 | |
| Hvulgare_HORVU2Hr1G091170.18 HORVU2Hr1G091170.18 |
Low | No | 1040 | OG0003265 | Get ORF Coding potential... Type: noncoding Potential: -0.748 Folding energies... MFEI: -40.731 AMFE: -0.662 GC content %: 61.538 | |
| Hvulgare_HORVU2Hr1G091170.19 HORVU2Hr1G091170.19 |
Low | No | 961 | OG0003265 | Get ORF Coding potential... Type: noncoding Potential: -0.738 Folding energies... MFEI: -41.093 AMFE: -0.672 GC content %: 61.186 | |
| Hvulgare_HORVU2Hr1G091170.20 HORVU2Hr1G091170.20 |
Low | No | 1061 | OG0005798 | Get ORF Coding potential... Type: noncoding Potential: -0.681 Folding energies... MFEI: -39.651 AMFE: -0.659 GC content %: 60.132 | |
| Hvulgare_HORVU2Hr1G091170.21 HORVU2Hr1G091170.21 |
Low | No | 1262 | OG0005798 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -38.796 AMFE: -0.660 GC content %: 58.796 | |
| Hvulgare_HORVU2Hr1G091170.22 HORVU2Hr1G091170.22 |
Low | No | 1038 | OG0005798 | Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -39.528 AMFE: -0.658 GC content %: 60.116 | |
| Hvulgare_HORVU2Hr1G091170.23 HORVU2Hr1G091170.23 |
Low | No | 1095 | OG0003265 | Get ORF Coding potential... Type: noncoding Potential: -0.755 Folding energies... MFEI: -38.219 AMFE: -0.649 GC content %: 58.904 | |
| Hvulgare_HORVU2Hr1G091170.3 HORVU2Hr1G091170.3 |
Low | No | 456 | OG0039432 | Get ORF Coding potential... Type: noncoding Potential: -0.690 Folding energies... MFEI: -28.224 AMFE: -0.625 GC content %: 45.175 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Hvulgare_HORVU2Hr1G091170.23 | SwissProt | 2021-04-01 | Q7X6J9 | 3.07e-6 |
| Hvulgare_HORVU2Hr1G091170.18 | SwissProt | 2021-04-01 | Q7X6J9 | 2.98e-6 |
| Hvulgare_HORVU2Hr1G091170.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Hvulgare_HORVU2Hr1G091170.19 | SwissProt | 2021-04-01 | Q7X6J9 | 2.41e-6 |
| Hvulgare_HORVU2Hr1G091170.20 | SwissProt | 2021-04-01 | Q7X6J9 | 2.69e-7 |
| Hvulgare_HORVU2Hr1G091170.21 | SwissProt | 2021-04-01 | Q7X6J9 | 3.59e-7 |
| Hvulgare_HORVU2Hr1G091170.22 | SwissProt | 2021-04-01 | Q7X6J9 | 3.57e-7 |
| Hvulgare_HORVU2Hr1G091170.17 | SwissProt | 2021-04-01 | Q7X6J9 | 3.83e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
